View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_29 (Length: 300)
Name: NF5761_low_29
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 32 - 245
Target Start/End: Complemental strand, 14129861 - 14129646
Alignment:
| Q |
32 |
gatgtgaagcattctttagaattctgatttaaacatagatcaattttggagagattatacataattcattcttgattgaattcaaatataccaccgccaa |
131 |
Q |
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| T |
14129861 |
gatgtgaagcattctttagaattctgatttaaacatagatcaattttggagagattatacataattcattcttgattgaattcaaatataccaccaccaa |
14129762 |
T |
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| Q |
132 |
ggctcccataatct-ggcatataaggtaacacatcaaatgattaaataannnnnnncttgagaggat-aaaattcattttttatttacgaatttgaatag |
229 |
Q |
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| T |
14129761 |
ggctcccataatctgggcatataaggtaacacatcaaatgattaaataatttttttcttgagaggataaaaattcattttttatttacgaatttgaaaag |
14129662 |
T |
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| Q |
230 |
caagaacattaattta |
245 |
Q |
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| T |
14129661 |
caagaacattaattta |
14129646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 14129477 - 14129428
Alignment:
| Q |
243 |
ttactagataggtatgttttctctatcatgtgatcgagtagttgatgatg |
292 |
Q |
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| T |
14129477 |
ttactagataggtaagttttctctatcatgtgatcgagtagtagatgatg |
14129428 |
T |
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