View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_30 (Length: 298)
Name: NF5761_low_30
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 47773201 - 47773486
Alignment:
| Q |
13 |
aaaatatgttgtctatgtttatgaaataaatattttgaaactcctaaagagctatcaaaggctatatagattttttaaagaacaagttgagatgaaggac |
112 |
Q |
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| T |
47773201 |
aaaatatgttgtctatgtttatgaaataaatattttgaaactcctaaagagctttcaaaggctatatagattttttaaagaacaagttgagatgaaggac |
47773300 |
T |
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| Q |
113 |
ttgggaaagataaatttctgtcacaa--------------atttaaaattgagcaattgaataatgaaatttgtgtgcatnnnnnnncttatatagcaaa |
198 |
Q |
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| T |
47773301 |
ttgggaaagataaatttctgtcacaaatttaaaattgagcatttaaaattgagcaattgaataatgaaatttgtgtgcataaaaaaacttatatagcaaa |
47773400 |
T |
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| Q |
199 |
agcgataaagtgtgtatatattaacaaatcttatctcttgtgtacttcaattgac------gtgagatcactagatgtggataaatat |
280 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47773401 |
agcgataaagtgtg--tatattaacaaatcttatctcttgtgtacttcaattgacgtgagagtgagatcactagatgtggataaatat |
47773486 |
T |
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