View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_38 (Length: 250)
Name: NF5761_low_38
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_38 |
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| [»] scaffold0455 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 41419847 - 41420069
Alignment:
| Q |
18 |
catagttccaattctgattcaaatgtagcttccttaagaagtcctctcaaatccatccacacaaaaagtccaccgttactttgtaaacaattaattccaa |
117 |
Q |
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| T |
41419847 |
catagttccaattctgattcaaatgtagcttccttaagaagtcctctcaaatccatccacacaaaaagtccaccgttactttgtaaacaattaattccaa |
41419946 |
T |
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| Q |
118 |
ctttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcgtcatcagacaacatttt |
217 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
41419947 |
ctttggttaatccactggtgaaaattctgtacctttgtgctaacctctttgcactttcagtaagaaactttttaacgaactcgtcatcagacagcatttt |
41420046 |
T |
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| Q |
218 |
tgccatcaagtattgtgtctgtg |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
41420047 |
cgccatcaagtattgtgtctgtg |
41420069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 8331 - 8518
Alignment:
| Q |
18 |
catagttccaattctgattcaaatgtagcttccttaagaagtcctctcaaatccatccacacaaaaagtccaccgttactttgtaaacaattaattccaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8331 |
catagttccaattctgattcaaatgtagcttccttaagaagtcctctcagatccatccacacaaaaagtccaccgttactttgtaaacaattaattccaa |
8430 |
T |
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| Q |
118 |
ctttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcgtcatc |
205 |
Q |
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| T |
8431 |
ctttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcgtcatc |
8518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 28129744 - 28129931
Alignment:
| Q |
18 |
catagttccaattctgattcaaatgtagcttccttaagaagtcctctcaaatccatccacacaaaaagtccaccgttactttgtaaacaattaattccaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129744 |
catagttccaattctgattcaaatgtagcttccttaagaagtcctctcagatccatccacacaaaaagtccaccgttactttgtaaacaattaattccaa |
28129843 |
T |
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| Q |
118 |
ctttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcgtcatc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28129844 |
ctttggttaatccactagtgaaaattttgtacctttgtgctaacctctttgcactttcagtaagaaacttttcaacgaactcgtcatc |
28129931 |
T |
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