View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5761_low_39 (Length: 246)
Name: NF5761_low_39
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 51190714 - 51190954
Alignment:
| Q |
1 |
aagaaaggaagtgtttcaattactttttgttcaacgccagaatttatagacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51190714 |
aagaaaggaagtgtttcaattactttttgttcaacgccagaatttatagacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggt |
51190813 |
T |
|
| Q |
101 |
ttagaagatgaataggagtaacacgacagaatttgacatatacaagtaagataaaagttaggaaaaacattatggaaagtactattattacaacaccttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51190814 |
ttagaagatgaataggagtaacacgacagaatttgacatatacaagtaagataaaagttaggaaaaacattatggaaagtactattattacaacaccttt |
51190913 |
T |
|
| Q |
201 |
acttggagtaacaccttttggtaactctgccatgttctgtg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51190914 |
acttggagtaacaccttttggtaactctgccatgttctgtg |
51190954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University