View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_40 (Length: 242)
Name: NF5761_low_40
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38580546 - 38580770
Alignment:
| Q |
1 |
actaaatcatataaatgttacaagcacttgtataaataaataaacatttcaccttatcataaccttctcaccacaattctaaatcccaatcaactttagg |
100 |
Q |
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| T |
38580546 |
actaaatcatataaatgttacaagcacttgtataaataaataaacatttcaccttatcataacctgctcaccacaattctaaatcccaatcaactttagg |
38580645 |
T |
|
| Q |
101 |
ttatttgttgtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggag |
200 |
Q |
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| T |
38580646 |
ttatttgttgtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggag |
38580745 |
T |
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| Q |
201 |
aaaccaaatgaagatcctcttttct |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
38580746 |
aaaccaaatgaagatcctcttttct |
38580770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 38561344 - 38561554
Alignment:
| Q |
15 |
atgttacaagcacttgtataaataaataaacatttcaccttatcataaccttctcaccacaattctaaatcccaatcaactttaggttatttgttgtaac |
114 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38561344 |
atgttacaagcatttatataaataaataaacatttcaccttatcataaccttctcactacaattctaaatcccaatcaactttaggttatttgctgtaac |
38561443 |
T |
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| Q |
115 |
aaaaattcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaaga |
214 |
Q |
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| T |
38561444 |
aaaaattcaatggatcaaaatcaacaaggaggtcgaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaaga |
38561543 |
T |
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| Q |
215 |
tcctcttttct |
225 |
Q |
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||||||||||| |
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| T |
38561544 |
tcctcttttct |
38561554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 38605829 - 38605975
Alignment:
| Q |
79 |
ctaaatcccaatcaactttaggttatttgttgtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaa |
178 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38605829 |
ctaaaacccaatcaactttaggttatttgttgtaacaaaaattcaatggatcaaaatcaacaaggaggtcgaccttcttcttcaaccaaagtggaaagaa |
38605928 |
T |
|
| Q |
179 |
agattgttgagaaaaataggagaaaccaaatgaagatcctcttttct |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38605929 |
agattgttgagaaaaataggagaaaccaaatgaagatcctcttttct |
38605975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 38622460 - 38622363
Alignment:
| Q |
120 |
ttcaatggatcataatcaacaaggaggtcaaccttcttcttcaaccaaagtggaaagaaagattgttgagaaaaataggagaaaccaaatgaagatcctc |
219 |
Q |
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||||||||| ||| ||||||||| | ||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||| || |||||||||||| |
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| T |
38622460 |
ttcaatggaccatgatcaacaagaatgtcaaccttcttc---aaccaaagtcgaaagaaaggtcgttgagaaaaataggagaaatcagatgaagatcctc |
38622364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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