View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_8 (Length: 516)
Name: NF5761_low_8
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 52396330 - 52396050
Alignment:
| Q |
19 |
gttggtccaccaccgtttctcaagaaaacttttgaaatggtggatgatccggaaactgacccgattgtttcatggagtgcttctcgtgatagttttgttg |
118 |
Q |
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| T |
52396330 |
gttggtccaccaccgtttctcaagaagacttttgaaatggtggaggatctggaaactgacccgattgtttcatggagtgcttctcgtgatagttttgttg |
52396231 |
T |
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| Q |
119 |
tttgggattctcatgaattctccaaaattcttcttcctaagtactttaagcataataatttttctagcttcattcgccagctcaacacctatgtaagtcn |
218 |
Q |
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| T |
52396230 |
tttgggattctcatgaattctccaaaattcttcttcctaagtactttaagcataataatttttctagcttcattcgccagctcaacacctatgtaagtca |
52396131 |
T |
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| Q |
219 |
nnnnnnttctcacaatcctattaataatcgtaattctctgtatcttcatatgttatcattgcatacatatttataatcttg |
299 |
Q |
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| T |
52396130 |
aaaaaattctcacaatcctattaataatcgtaattctctgtatcttcatatgttatcattgcatacatatttataatcttg |
52396050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 376 - 504
Target Start/End: Complemental strand, 52396031 - 52395903
Alignment:
| Q |
376 |
aaaattaattttgttaaaaagttgatttaacataaaatgattcatatttatagggagctatgaatgtttggttcctcttttacagatgttgaattgattt |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52396031 |
aaaattaattttgttaaaaagttgatttaacataaaatgatccatatttatagggagctatgaatgtctggttcctcttttacagatgttgaattgattt |
52395932 |
T |
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| Q |
476 |
ttgacatgtttgttgttctcgattagaat |
504 |
Q |
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| T |
52395931 |
ttgacatgtttgttgttctcgattagaat |
52395903 |
T |
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