View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5762_high_1 (Length: 542)
Name: NF5762_high_1
Description: NF5762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5762_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 528
Target Start/End: Original strand, 37793239 - 37793750
Alignment:
| Q |
17 |
aggtagcactgtcttggctacacagttttgtgatttccagcaatgtaatgtaacagcacaaaactaggtaataaattaagtacatagattttgtgaggga |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793239 |
aggtagcaccgtcttggctacacagttttgtgatttccagcaatgtaatgtaacagcacaaaactaggtaataaattaagtacatagattttgtgaggga |
37793338 |
T |
|
| Q |
117 |
gacttgtcctatttgagaaaatattatataagatttggccttcttgattgtataaatccaagaactataatcaaagtgaatgatgccattaatacaattc |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793339 |
gacttgtcctatttgggaaaatattatataagatttggccttcttgattgtataaatccaagaactataatcaaagtgaatgatgccattaatacaattc |
37793438 |
T |
|
| Q |
217 |
tcaatagatgcagaataacaaaagagttacttcttgtgtatgttttgaatcacaaaaccatagtaagatgttcagcttgttaaaacgaatcacataagta |
316 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793439 |
tcaatagatgcagaataactaaagagttacttcttgtatttgttttgaatcacaaaaccatggtaagatgttcagcttgttaaaacgaatcacataagta |
37793538 |
T |
|
| Q |
317 |
ctcttgcataaagttttaaaaaattaattgttagttccactagagcttagatatgagattctaagctctacctagtgacccatgttattatgatagtatt |
416 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
37793539 |
ctctttcataaagttttaaaaaattaattgttagttccactagagcttagatatgagattctaagctctacctagtgacccaggttattatgacagtatt |
37793638 |
T |
|
| Q |
417 |
gcccctttgtcaaaaagaaaattgctataagacatcacggtccactagagactcaaccaaatcagtgtaaaattagatgttgcataattttgttaagttc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
37793639 |
gcccctttgtcaaaaagaaaattgctataagacatcacggtccactagagactcaaccaaatcagtgtaaaatttgatgttgcataattttgctaagttc |
37793738 |
T |
|
| Q |
517 |
tggaagtataat |
528 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37793739 |
tggaagtataat |
37793750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 2918225 - 2918414
Alignment:
| Q |
25 |
ctgtcttggctacacagttttgtgatttccagcaatgtaatgtaacagcacaaaactaggtaataaattaagtacatagattttgtgagggagacttgtc |
124 |
Q |
| |
|
||||| |||||||| |||||||| | |||||||||||||| || ||||||| ||| ||||||||||||| ||| || ||| |||| ||||| | |
|
|
| T |
2918225 |
ctgtcatggctacatagttttgtaacttccagcaatgtaa-----caacacaaaattagcaaataaattaagtatatatatcttgggagg-agactagct |
2918318 |
T |
|
| Q |
125 |
ctatttgagaaaatattatataagatttggccttcttgattgtataaatccaagaactataatcaaagtgaatgatgccattaatacaattctcaata |
222 |
Q |
| |
|
|||||| |||||||| | ||||||||| | ||| | ||||| |||||||||||| | || |||||||||||||||||| | |||||| |||||||| |
|
|
| T |
2918319 |
ctatttcagaaaatagtgcataagattttggctt--tcattgtgtaaatccaagaattgtactcaaagtgaatgatgccactgatacaagtctcaata |
2918414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 3016449 - 3016376
Alignment:
| Q |
157 |
ttcttgattgtataaatccaagaactataatcaaagtgaatgatgccattaatacaattctcaatagatgcaga |
230 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||||||||| | ||| ||||| |||||||||||||||| |
|
|
| T |
3016449 |
ttcttgattggataaatccaagaattgcaatcaaagtgaatgattctattggtacaagtctcaatagatgcaga |
3016376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 417
Target Start/End: Original strand, 2918573 - 2918653
Alignment:
| Q |
337 |
aaattaattgttagttccactagagcttagatatgagattctaagctctacctagtgacccatgttattatgatagtattg |
417 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||| || ||||||||| |||| || ||||| |||||||||| ||||||| |
|
|
| T |
2918573 |
aaattaattgtaagttccagtagagctttaatatgggagtctaagctcaacctggtcacccaggttattatgacagtattg |
2918653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 2918482 - 2918530
Alignment:
| Q |
278 |
agtaagatgttcagcttgttaaaacgaatcacataagtactcttgcata |
326 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
2918482 |
agtaagacgttcagcttgttaaaacgaataacatgagtactctttcata |
2918530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 28022330 - 28022445
Alignment:
| Q |
117 |
gacttgtcctatttgagaaaatattatataagatttggccttcttgattgtataaatccaagaactataatcaaagtgaatgatgccatta--atacaat |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||| ||||||| |
|
|
| T |
28022330 |
gacttgccctatttgagaaaatattatataagatttggccttcttgattgtataaatcaaagaattgtaatcagagtgaatgatgccattaatatacaat |
28022429 |
T |
|
| Q |
215 |
tctcaatagatgcaga |
230 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28022430 |
tctcaatagatgcaga |
28022445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 337 - 521
Target Start/End: Original strand, 28022535 - 28022730
Alignment:
| Q |
337 |
aaattaattgttagttccactagagcttagatatgagattctaagctctacctagtgacccatgttattatgatag--tattgcccctttgtcaaaaaga |
434 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| | || | |||||||| || |||| ||||||||||||||||| |
|
|
| T |
28022535 |
aaattaattgttagttccaccagagcttagatatgggattctaagctctacctagtca-acaggatattatgacagtatattccccctttgtcaaaaaga |
28022633 |
T |
|
| Q |
435 |
aaattgct-------ataagacatcacggtccactaga---gactcaaccaaatcagtgtaaaattagatgttgcataattttgttaagttctggaa |
521 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||||||||||||||||||| || ||||||||| | |||| ||| |||||||| |
|
|
| T |
28022634 |
aaattgctgcaagtcataagttatcacggtccactagactggactcaaccaaatcagtgtaaagtttgatgttgcaaatttttcctaaattctggaa |
28022730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 28021618 - 28021675
Alignment:
| Q |
37 |
cacagttttgtgatttccagcaatgtaatgtaacagcacaaaactaggtaataaatta |
94 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||| |||| |
|
|
| T |
28021618 |
cacagttttgtgatttccagcaatgtaatataacatcacaaaattagctaatatatta |
28021675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University