View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5762_high_6 (Length: 345)
Name: NF5762_high_6
Description: NF5762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5762_high_6 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 33606563 - 33606219
Alignment:
| Q |
1 |
tggaggagtagactcattctccttcaaaccaggaaaatacaacgccaagaaattctgcctcgaaccaacttcattcacagttaaagcagaaggtgtaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33606563 |
tggaggagtagactcattctccttcaaaccaggaaaatacaacgccaagaaattctgcctcgaaccaacttcattcacagttaaagcagaaggtgtaacc |
33606464 |
T |
|
| Q |
101 |
aagaacaccccacttgcattccaaaacaccaaactcatgacacgtttaacctacaccctcgacgagattgaaggaccctttgaggtttcatcagacggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33606463 |
aagaacaccccacttgcattccaaaacaccaaactcatgacacgtttaacctacaccctcgacgagattgaaggaccctttgaggtttcatcagacggct |
33606364 |
T |
|
| Q |
201 |
ctgtcaaatttgaggagaaagatggcattgactacgccgcagtcacagttcagcttcccggcggtgagcgtgtgccattccttttcaccatcaaacaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33606363 |
ctgtcaaatttgaggagaaagatggcattgactacgccgcagtcacagttcagcttcccggtggtgagcgtgtgccattccttttcaccatcaaacaatt |
33606264 |
T |
|
| Q |
301 |
ggtagcatcagggaagccagagagcttcagtggtgagtatttggt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33606263 |
ggtagcatcagggaagccagagagcttcagtggtgagtatttggt |
33606219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 6962757 - 6963084
Alignment:
| Q |
11 |
gactcattctccttcaaaccaggaaaatacaacgccaagaaattctgcctcgaaccaacttcattcacagttaaagcagaaggtgtaaccaagaacaccc |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || || ||||||||||| |||||||||||||||||||| ||| | ||||| |||| || ||| ||| |
|
|
| T |
6962757 |
gactcattctccttcaagtcaggaaaatacaatgcaaaaaaattctgccttgaaccaacttcattcacagtaaaatccgaaggcataactaaaaactccc |
6962856 |
T |
|
| Q |
111 |
cacttgcattccaaaacaccaaactcatgacacgtttaacctacaccctcgacgagattgaaggaccctttgaggtttcatcagacggctctgtcaaatt |
210 |
Q |
| |
|
| || | |||||||| || || || ||||| || || || ||||| || |||||||| |||||||| || || || || | ||||| | |||||||| |
|
|
| T |
6962857 |
cgctcgatttccaaaatactaagctaatgacgcgcttgacatacacgctggacgagatagaaggaccattcgaagtatctcctgacggtacagtcaaatt |
6962956 |
T |
|
| Q |
211 |
tgaggagaaagatggcattgactacgccgcagtcacagttcagcttcccggcggtgagcgtgtgccattccttttcaccatcaaacaattggtagcatca |
310 |
Q |
| |
|
|||||||||||||||||||| || || || || || |||||||| ||||| || ||||| ||||||||||| ||||| |||||||| |||||||| ||| |
|
|
| T |
6962957 |
cgaggagaaagatggcattgattatgctgctgtgactgttcagctccccggaggcgagcgcgtgccattcctcttcacgatcaaacagttggtagcgtca |
6963056 |
T |
|
| Q |
311 |
gggaagccagagagcttcagtggtgagt |
338 |
Q |
| |
|
|||||||| || ||||| ||||| |||| |
|
|
| T |
6963057 |
gggaagccggacagctttagtggagagt |
6963084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University