View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5762_low_2 (Length: 479)
Name: NF5762_low_2
Description: NF5762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5762_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 32189909 - 32189463
Alignment:
| Q |
18 |
aaattgtaatcatcatcgtcaaccaaggcttcaaggtaggaattagagccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcactg |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32189909 |
aaattgtaatcatcatcgtcaactaaggcttcaaggtaggaattagagccaccaacgatgatcggaagatttccaccgctcatgattaaatcaatcgctg |
32189810 |
T |
|
| Q |
118 |
aagttgatttttcgcgaaaatcattggatgtgaactctatgttggggttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189809 |
aagttgatttttcgcgaaaatcattggatgtgaactctatgttggggttatgtgttcctaataaatggtgtggtattcctttttgttcttctagagtgat |
32189710 |
T |
|
| Q |
218 |
tttgtttgttactatgtccaaaccttcgtagatttgaattttgtctgagttgatgatttctgacgggaaataattggctaagtcaattgaaagctttgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189709 |
tttgtttgttactatgtccaaaccttcgtagatttgaattttgtctgagttgatgatttctgacgggaaataattggctaagtcaattgaaagctttgac |
32189610 |
T |
|
| Q |
318 |
tttcctgttcctgttgcgcccatcaccaacactacattttctttttgaatttgtctcatattcagttttttgccactgcattgaacattgcttgttaagg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189609 |
tttcctgttcctgttgcgcccatcaccaacactacattttctttttgaatttgtctcatattcagttttttgccactgcattgaacattgcttgttaagg |
32189510 |
T |
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| Q |
418 |
gttgtctaattagtctgcacatggacaatgagatgctcatgatgatg |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32189509 |
gttgtctaattagtctgcacatggacaatgagatgctcatgatgatg |
32189463 |
T |
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