View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5762_low_3 (Length: 457)
Name: NF5762_low_3
Description: NF5762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5762_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 67 - 315
Target Start/End: Complemental strand, 3895519 - 3895271
Alignment:
| Q |
67 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
166 |
Q |
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| T |
3895519 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
3895420 |
T |
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| Q |
167 |
gcctctgtcgccgacccagcaacctcccccgtcttctctgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895419 |
gcctctgtcgccgacccagcaacctcccccgtcttctccgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
3895320 |
T |
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| Q |
267 |
tttcctttgcatcataagcataatctctagccttctctccagcattctc |
315 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
3895319 |
tttcctttgcatcataagcataatctctagctttctccccagcactctc |
3895271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 257 - 447
Target Start/End: Complemental strand, 3895197 - 3895007
Alignment:
| Q |
257 |
tccttggttctttcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttat |
356 |
Q |
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| T |
3895197 |
tcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggctttat |
3895098 |
T |
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| Q |
357 |
cccacacagaacctgctgcttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgccttctctgc |
447 |
Q |
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| T |
3895097 |
cccacacagaacctgctgcttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgccttctctgc |
3895007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 372
Target Start/End: Complemental strand, 3895079 - 3894962
Alignment:
| Q |
255 |
cttccttggttctttcctttgcatcataagcataatctctagccttctctccagcattctcagccttctctgcagccctatttgttccttctctggcttt |
354 |
Q |
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|||| |||||||| || ||| | ||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || | |||||||||| ||||||| |
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| T |
3895079 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgccttctctgcagctctgtctgttccttctttggcttt |
3894980 |
T |
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| Q |
355 |
atcccacacagaacctgc |
372 |
Q |
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| T |
3894979 |
ctcccacattgaacctgc |
3894962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 3895574 - 3895538
Alignment:
| Q |
9 |
catcatctactactacaccagaaccaccactaccacg |
45 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3895574 |
catcatctactactacaccagaaccaccactaccacg |
3895538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 438
Target Start/End: Complemental strand, 3895331 - 3895268
Alignment:
| Q |
375 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgc |
438 |
Q |
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|||| |||||||| || ||| | ||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
3895331 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
3895268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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