View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5762_low_4 (Length: 407)
Name: NF5762_low_4
Description: NF5762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5762_low_4 |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 12082283 - 12081911
Alignment:
| Q |
16 |
atgagggtttcctttagctaaaatgagtttcaccgtctccggataaacaaaggtaacaaatccgaacatcctcttttgctgatatggaatcctcacatct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12082283 |
atgagggtttcctttagctaaaatgagtttcaccgtctccggataaacaaaggtaacaaatccgaacatcctcttttgctgatatggaatcctcacatct |
12082184 |
T |
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| Q |
116 |
tgcacaagtccataaatgctgcaatataattaatgaaaaacaagttaatttccaaaaactatactaattagtaaaccatgcatgtttgaaattaccgtga |
215 |
Q |
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| T |
12082183 |
tgaacaagtccataaatgctgcaatataattaattcaaaacaagttaacttctaaaaactatactaattagtaaaccatgcatgtttgatattaccgtga |
12082084 |
T |
|
| Q |
216 |
gttcggcggatttgcttacaaactcaacgtcaaaccgaacacgcaggtataatccaattcattatgaaggatagatagggaaaaagtggtacctgaagta |
315 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
12082083 |
gttcggcggatttgctgccaaactcaacgtcaaaccgaacacgcaggtataatccaattcattattaaggatagatagggaaaaagtggcacctgaagta |
12081984 |
T |
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| Q |
316 |
gtttgaaacatcttcctctttgaaagtactatcagctggaaaagtcaagtatatctgcctagaagctggattc |
388 |
Q |
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| T |
12081983 |
gtttgaaacatcttcctctttgaaagtactatcagctggaaaagtcaagtatatctgcctagaagctggattc |
12081911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 22344537 - 22344592
Alignment:
| Q |
311 |
aagtagtttgaaacatcttcctctttgaaagtactatcagctggaaaagtcaagta |
366 |
Q |
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| T |
22344537 |
aagtagtttgatacatcctcctctgagaaagtgctatcagctggaaatgtcaagta |
22344592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 206583 - 206661
Alignment:
| Q |
306 |
acctgaagtagtttgaaacatcttcctctttgaaagtactatcagctggaaaagtcaagtatatctgcctagaagctgg |
384 |
Q |
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| T |
206583 |
acctgaagtattctgaaacatcttcctctctgaaagtactatcagctgggaaagtcaagtagatttgtcttgaagctgg |
206661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 206376 - 206477
Alignment:
| Q |
16 |
atgagggtttcctttagctaaaatgagtttcaccgtctccggataaacaaaggtaacaaatccgaacatcctcttttgctgatatggaatcctcacatct |
115 |
Q |
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||||||||||||||||| |||||| ||||| ||||| ||| ||||||| |||||||| || ||||| | ||| ||||| |||||||||||||||||| |
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| T |
206376 |
atgagggtttcctttagacaaaatgtccttcactgtctctggaaaaacaaatgtaacaaagccaaacatacgcttctgctggtatggaatcctcacatct |
206475 |
T |
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| Q |
116 |
tg |
117 |
Q |
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|| |
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| T |
206476 |
tg |
206477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 14610794 - 14610716
Alignment:
| Q |
306 |
acctgaagtagtttgaaacatcttcctctttgaaagtactatcagctggaaaagtcaagtatatctgcctagaagctgg |
384 |
Q |
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|||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||| || || || |||||||| |
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| T |
14610794 |
acctgaagtattctgaaacatcttcctctctgaaagtactatcagctgggaaagtcaagtagatttgtcttgaagctgg |
14610716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 14611001 - 14610900
Alignment:
| Q |
16 |
atgagggtttcctttagctaaaatgagtttcaccgtctccggataaacaaaggtaacaaatccgaacatcctcttttgctgatatggaatcctcacatct |
115 |
Q |
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||||||||||||||||| |||||| ||||| ||||| ||| ||||||| |||||||| || ||||| | ||| ||||| |||||||||||||||||| |
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| T |
14611001 |
atgagggtttcctttagacaaaatgtccttcactgtctctggaaaaacaaatgtaacaaagccaaacatacgcttctgctggtatggaatcctcacatct |
14610902 |
T |
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| Q |
116 |
tg |
117 |
Q |
| |
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|| |
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| T |
14610901 |
tg |
14610900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 1992164 - 1992053
Alignment:
| Q |
16 |
atgagggtttcctttagctaaaatgagtttcaccgtctccggataaacaaaggtaacaaatccgaacatcctcttttgctgatatggaatcctcacatct |
115 |
Q |
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|||||| |||||||| | ||| |||| | |||| ||||||||| | |||||||| ||||| || ||||| | ||||||||| || ||||| ||||||||| |
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| T |
1992164 |
atgaggatttcctttcgataatatgactctcactgtctccggaaagacaaaggttacaaacccaaacatgcgcttttgctggtaaggaattctcacatct |
1992065 |
T |
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| Q |
116 |
tgcacaagtcca |
127 |
Q |
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| T |
1992064 |
tggacaggtcca |
1992053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 1990618 - 1990549
Alignment:
| Q |
305 |
tacctgaagtagtttgaaacatcttcctctttgaaagtactatcagctggaaaagtcaagtatatctgcc |
374 |
Q |
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| T |
1990618 |
tacctgaagtactccgaaacatcttcatctttgaatgtgctttcagcaggaaaggtcaagtaaatctgcc |
1990549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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