View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5762_low_8 (Length: 256)
Name: NF5762_low_8
Description: NF5762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5762_low_8 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 19496182 - 19495944
Alignment:
| Q |
1 |
aatctgctttgtatcgaaactatttctggacctacacagactaccgcatcaaaagtggaaaaaatatttgggacgaacttgtgaaagcaatgaatgaatc |
100 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
19496182 |
aatctgctttgtgtcgaaactatttcttgacctacacagactaccgcatcaaaagtggaaaaaaaatctgggacgaacttgtgaaagcaatgaatgaatc |
19496083 |
T |
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| Q |
101 |
aactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtggacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19496082 |
aactctttttctagtggtgttctcagagaactacgcggattccagttggtgtttggatgaacttgttgaaataatgaagtgtagaagaaaaagtagacaa |
19495983 |
T |
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| Q |
201 |
gttgttgttcttcctgtgttctaccgtattgatccttca |
239 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
19495982 |
gttgttgttcttcctgtgttctaccgtattgaaccttca |
19495944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 15608 - 15499
Alignment:
| Q |
75 |
gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa |
174 |
Q |
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|||||||| |||||||| || |||| ||||||||||| || |||||||| |||||||||||| ||| | ||||||||| | ||||| |||||||||| |
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| T |
15608 |
gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa |
15509 |
T |
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| Q |
175 |
tgaagtgtag |
184 |
Q |
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| T |
15508 |
tggagtgtag |
15499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 13164380 - 13164481
Alignment:
| Q |
83 |
gaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataatgaagtgt |
182 |
Q |
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||||||||| |||||||| ||||||||||| || |||||||||||||||||||| ||| | ||||||||| | ||||| ||| |||||||| ||||| |
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| T |
13164380 |
gaaagcaatcaatgaatccactctttttcttgtcgtgttctcagagaactacgcattttcaacatggtgtttgaacgaactagttcaaataatggagtgt |
13164479 |
T |
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| Q |
183 |
ag |
184 |
Q |
| |
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|| |
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| T |
13164480 |
ag |
13164481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 14403245 - 14403354
Alignment:
| Q |
75 |
gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa |
174 |
Q |
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|||||||| |||||||| || |||| ||||||||||| || |||||||| |||||||||||| ||| | ||||||||| | ||||| |||||||||| |
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| T |
14403245 |
gaacttgttaaagcaatcaaacaatccactctttttcttgttgtgttctcggagaactacgcgtcttcaacatggtgtttgaacgaactggttgaaataa |
14403344 |
T |
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| Q |
175 |
tgaagtgtag |
184 |
Q |
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| T |
14403345 |
tggagtgtag |
14403354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 5568675 - 5568781
Alignment:
| Q |
75 |
gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa |
174 |
Q |
| |
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||||||| ||||||||| || |||||||||| ||||| || ||||||||||||||||| || ||| | ||||||||| |||||||||||||| ||| |
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| T |
5568675 |
gaacttgagaaagcaatcaaacaatcaactctgtttcttgttgtgttctcagagaactatgcttcttcaacatggtgtttgaatgaacttgttgaactaa |
5568774 |
T |
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| Q |
175 |
tgaagtg |
181 |
Q |
| |
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|| |||| |
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| T |
5568775 |
tggagtg |
5568781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 5562348 - 5562449
Alignment:
| Q |
75 |
gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa |
174 |
Q |
| |
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||||||||||| |||||||| |||| ||| | ||||| || |||||||| |||||||||||| ||| | ||||||||| ||||||| ||| |||||| |
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| T |
5562348 |
gaacttgtgaaggcaatgaaacaatccactttgtttcttgtcgtgttctcggagaactacgcgtcttcaacatggtgtttgaatgaactcgttcaaataa |
5562447 |
T |
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| Q |
175 |
tg |
176 |
Q |
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|| |
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| T |
5562448 |
tg |
5562449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 5624537 - 5624645
Alignment:
| Q |
75 |
gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa |
174 |
Q |
| |
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||||||||||||||||| || |||| ||||| | ||| ||||||||||| |||||||||||| || | ||||||||| | ||||| ||| |||||| |
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| T |
5624537 |
gaacttgtgaaagcaatcaaacaatccactctgtatcttgtggtgttctcggagaactacgcgtcatcaacatggtgtttgaacgaactcgttcaaataa |
5624636 |
T |
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| Q |
175 |
tgaagtgta |
183 |
Q |
| |
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|| |||||| |
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| T |
5624637 |
tggagtgta |
5624645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 5598547 - 5598440
Alignment:
| Q |
75 |
gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa |
174 |
Q |
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|||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| || ||| | ||||||||| | ||||| ||| |||||| |
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| T |
5598547 |
gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa |
5598448 |
T |
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| Q |
175 |
tgaagtgt |
182 |
Q |
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|| ||||| |
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| T |
5598447 |
tggagtgt |
5598440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 5636728 - 5636835
Alignment:
| Q |
75 |
gaacttgtgaaagcaatgaatgaatcaactctttttctagtggtgttctcagagaactacgcggattcgagttggtgtttggatgaacttgttgaaataa |
174 |
Q |
| |
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|||||||| |||||||| || ||||| ||||| ||||| || ||||||||||||||||| || ||| | ||||||||| | ||||| ||| |||||| |
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| T |
5636728 |
gaacttgttaaagcaatcaaagaatccactctgtttcttgttgtgttctcagagaactatgcatcttcaacatggtgtttgaacgaactcgttcaaataa |
5636827 |
T |
|
| Q |
175 |
tgaagtgt |
182 |
Q |
| |
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|| ||||| |
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| T |
5636828 |
tggagtgt |
5636835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 12190502 - 12190405
Alignment:
| Q |
147 |
tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcaca |
241 |
Q |
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||||||||| ||||||| ||||||||||||||||| | || ||| | | |||| ||||||||| ||||||||||||||||||| || |||||||| |
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| T |
12190502 |
tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcaca |
12190405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 12434930 - 12434833
Alignment:
| Q |
147 |
tggtgtttggatgaacttgttgaaataatgaagtgtagaagaaa--aagtggacag-gttgttgttcttcctgtgttctaccgtattgatccttcaca |
241 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||| | || ||| | | |||| ||||||||| ||||||||||||||||||| || |||||||| |
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| T |
12434930 |
tggtgtttgaatgaactcgttgaaataatgaagtgcaaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcaca |
12434833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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