View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763-Insertion-1 (Length: 573)
Name: NF5763-Insertion-1
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 121 - 570
Target Start/End: Complemental strand, 23315159 - 23314710
Alignment:
| Q |
121 |
ccttaggcaaaatctgtgctccagcccaccacacagctcatcaaatgtttgcagtaatccctgtcatatccagataacataatagtnnnnnnnnnn-ttc |
219 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
23315159 |
ccttaggcaaaatctgtgctccagcccacctcacaactcatcaaatgtttgcagtaatccctgtcatatccagataacataacagtaaaaaaaaatgttc |
23315060 |
T |
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| Q |
220 |
tcaattactaatacataacaactcatattttatttgaaaatgtgcatcacaattgtgtacattaaaaattaaaaataccttctgttggttagaaatgaag |
319 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
23315059 |
ccaattactaatacataacaactcatattttaattgaaaatgtgcatcacaattgtgtacattaaaaattaaaaataccttctattggtcagaaatgaag |
23314960 |
T |
|
| Q |
320 |
gtccacctagaatcaccaatgtcttctaaaagcaaggtcaaaattcagttccatgtctcctttgtttcactttctacagctgcaaaagccactggtagat |
419 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23314959 |
gcccacctagaatcaccaatgtcttctaaaagcaaggtcaaaaaccagttccatgtctcctttgtttcactttctacaactgcaaaagccactggtagat |
23314860 |
T |
|
| Q |
420 |
actggtcattgggatatctccctactgcaatcaacaactggccaccatacttgtttttcaagtgacaaccatcaacccctatgaaaggcctgcaactggt |
519 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23314859 |
actggtcattgggatctctccctactgcaatcaaaaactggccaccatactt-ttttttaagtgacaaccatcaacccctatgaaaggcctgcaactggt |
23314761 |
T |
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| Q |
520 |
ctttaaagctctcttgcaaccatcaaagcatacataaaacctaccaaatct |
570 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23314760 |
ctttaaagctctcttgcaaccatcaaagcatacataaaacctaccaaatct |
23314710 |
T |
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