View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5763_high_15 (Length: 301)
Name: NF5763_high_15
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 1898268 - 1898544
Alignment:
| Q |
18 |
cgatggagttagttgttacggcgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttggttgagcgattgggatggacgaggtacgtatt |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1898268 |
cgatggagttagttgttacgccgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttgcttgagcgattgggatggacgaggtacgtatt |
1898367 |
T |
|
| Q |
118 |
tgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgcttcactggaagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1898368 |
tgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgtttcactggaagt |
1898467 |
T |
|
| Q |
218 |
ctagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacatgatgatgt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1898468 |
gtagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgt |
1898544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 1907714 - 1907990
Alignment:
| Q |
18 |
cgatggagttagttgttacggcgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttggttgagcgattgggatggacgaggtacgtatt |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1907714 |
cgatggagttagttgttacgccgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttgcttgagcgattgggatggacgaggtacgtatt |
1907813 |
T |
|
| Q |
118 |
tgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgcttcactggaagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1907814 |
tgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgtttcactggaagt |
1907913 |
T |
|
| Q |
218 |
ctagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacatgatgatgt |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1907914 |
gtagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgt |
1907990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 2931365 - 2931093
Alignment:
| Q |
22 |
ggagttagttgttacggcgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttggttgagcgattgggatggacgaggtacgtatttgag |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2931365 |
ggagttagttgttacatcgtcggtgaaaatagagtcgagtaggtaagactgtagaacattgttgcttgagcgattgggatggacgaggtacgtatttgag |
2931266 |
T |
|
| Q |
122 |
aggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgcttcactggaagtctag |
221 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2931265 |
aggcggaggtgttttatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaaggaggtgtttcactggaagtctag |
2931166 |
T |
|
| Q |
222 |
ttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaagtgaacatgatgatgt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2931165 |
ttagaatttctgaaatgagatccaaagtaacagtgggaagttgtggtggcgcgtgaagtgaacacgatgatgt |
2931093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 101 - 279
Target Start/End: Original strand, 1891747 - 1891925
Alignment:
| Q |
101 |
tggacgaggtacgtatttgagaggcggaggtgtttgatggcgaatttgggatcggagataagataattccatgacttggagacagatttgagttgaagga |
200 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| |||||||| |||| ||||||||| ||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
1891747 |
tggacgaggtgcgtatttgagagacggaggtgtttcatggcgaacttggaatcggagattagagaattccatgacttgcagacagatcggagttgaagga |
1891846 |
T |
|
| Q |
201 |
ggtgcttcactggaagtctagttagaatttctgaaatgagatccaaagtaagagtgggaagttgtggtggcgcgtgaag |
279 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1891847 |
ggagcttcactggaagtctagttagaatttctgaaatgagatccaaaggaagagtgggaagttgtggtggcgcgtgaag |
1891925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University