View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5763_high_25 (Length: 250)
Name: NF5763_high_25
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 2623790 - 2623560
Alignment:
| Q |
4 |
catatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacgagtgcaatgtgtttccttaatgaccttatattata |
103 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
2623790 |
catatgatccatatgcaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatgtgtttccttaatgaccttagattata |
2623691 |
T |
|
| Q |
104 |
agtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccactttcc |
203 |
Q |
| |
|
|||||||||||| || || ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2623690 |
agtttttatgtctctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccacttttc |
2623591 |
T |
|
| Q |
204 |
cccatcaaacctgtcgattttccagcatcaa |
234 |
Q |
| |
|
|| | || | ||||||||||||||||||||| |
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|
| T |
2623590 |
cctaccagagctgtcgattttccagcatcaa |
2623560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2592249 - 2592006
Alignment:
| Q |
1 |
catcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacgagtgcaatgtgtttccttaatgaccttatatt |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| |
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| T |
2592249 |
catcatatgatccatatgcaatattttctttgatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgtttccttagtgaccttagatt |
2592150 |
T |
|
| Q |
101 |
ataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccactt |
200 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592149 |
ataaatttttatgtccctaccatcaattgtcactatccctttaagtggatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccactt |
2592050 |
T |
|
| Q |
201 |
tcccccatcaaacctgtcgattttccagcatcaatattattcga |
244 |
Q |
| |
|
|| || | ||| |||| |||||||| |||||||| ||| |||| |
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|
| T |
2592049 |
tctcctaccaacgctgttgattttccggcatcaattttaatcga |
2592006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 2596580 - 2596823
Alignment:
| Q |
1 |
catcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacgagtgcaatgtgtttccttaatgaccttatatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || ||| |
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| T |
2596580 |
catcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagatt |
2596679 |
T |
|
| Q |
101 |
ataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccactt |
200 |
Q |
| |
|
||| || |||||||| || |||||||||||||||||||||| || | ||||||||| ||||||||||||||||| || || ||||| |||||||||||| |
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|
| T |
2596680 |
atatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaattagtcctataattgtcgattttccagaaccactt |
2596779 |
T |
|
| Q |
201 |
tcccccatcaaacctgtcgattttccagcatcaatattattcga |
244 |
Q |
| |
|
||||| | |||| | ||||||||||| |||||||| ||| |||| |
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|
| T |
2596780 |
tcccctaccaaagccgtcgattttcctgcatcaattttaatcga |
2596823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 2440303 - 2440069
Alignment:
| Q |
1 |
catcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacgagtgcaatgtgtttccttaatgaccttatatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || ||| |
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|
| T |
2440303 |
catcatatgctccatatacaatattttctcttatggtaccaccaaacaatgttggttcttgactcacaagtgcaatatgtttccttaatgatcgtagatt |
2440204 |
T |
|
| Q |
101 |
ataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccactt |
200 |
Q |
| |
|
||||||||||||||| || || |||| |||||||||||||| ||| | ||||||||| |||||||||||||||||||| || ||||| |||||||||||| |
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|
| T |
2440203 |
ataagtttttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcctatgattgtcgattttccagaaccactt |
2440104 |
T |
|
| Q |
201 |
tcccccatcaaacctgtcgattttccagcatcaat |
235 |
Q |
| |
|
||||| | |||| | || |||||||| || ||||| |
|
|
| T |
2440103 |
tccccaaccaaagccgttgattttccggcgtcaat |
2440069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 2569029 - 2569264
Alignment:
| Q |
9 |
gctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacgagtgcaatgtgtttccttaatgaccttatattataagttt |
108 |
Q |
| |
|
||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| || | |
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|
| T |
2569029 |
gctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagtgcaatgtgttcccttaatgaccttagattatatgtct |
2569128 |
T |
|
| Q |
109 |
ttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccactttcccccat |
208 |
Q |
| |
|
||||||| || || ||||||||||||||||||| ||| | ||||||||| || ||||| ||||||||||| |||||||| ||||||||||||||||| | |
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|
| T |
2569129 |
ttatgtctctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataagtcctatgattgttgattttccagaaccactttcccctac |
2569228 |
T |
|
| Q |
209 |
caaacctgtcgattttccagcatcaatattattcga |
244 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| |||| |
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| T |
2569229 |
caaagctgtcgattttccagcatcaattttaatcga |
2569264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 2672396 - 2672639
Alignment:
| Q |
1 |
catcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacgagtgcaatgtgtttccttaatgaccttatatt |
100 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| || |||||||||||||| |||||||| | ||| |
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|
| T |
2672396 |
catcataagctccatatgcaatattttcccttatggtaccactaaacaatgttggttcttgactcacaagggcaatgtgtttcctcaatgacctgagatt |
2672495 |
T |
|
| Q |
101 |
ataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccactt |
200 |
Q |
| |
|
||| || |||||||| || |||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||| || ||||| |||||||||||| |
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|
| T |
2672496 |
atatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcctatgattgtcgattttccagaaccactt |
2672595 |
T |
|
| Q |
201 |
tcccccatcaaacctgtcgattttccagcatcaatattattcga |
244 |
Q |
| |
|
||||| | |||| | || |||||||| |||||||| ||| |||| |
|
|
| T |
2672596 |
tcccctaccaaagccgttgattttcctgcatcaattttaatcga |
2672639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 2641236 - 2641464
Alignment:
| Q |
1 |
catcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacgagtgcaatgtgtttccttaatgaccttatatt |
100 |
Q |
| |
|
||||||| ||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| ||||||| ||| |
|
|
| T |
2641236 |
catcataggctccgtatgcaatattttcccttatggtaccaccaaacagtgttggttcttgacttacaagtgcaatgtgtttccttaacgaccttagatt |
2641335 |
T |
|
| Q |
101 |
ataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccactt |
200 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||||| || | ||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
2641336 |
ataagactttatatcttcaccatcaattgtcactatccctttaattggatcatagaatctctcaattagtcctatgattgttgatttccctgaaccactt |
2641435 |
T |
|
| Q |
201 |
tcccccatcaaacctgtcgattttccagc |
229 |
Q |
| |
|
||||| | |||| | |||||||||||||| |
|
|
| T |
2641436 |
tccccgaccaaagccgtcgattttccagc |
2641464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 2 - 205
Target Start/End: Complemental strand, 2451027 - 2450824
Alignment:
| Q |
2 |
atcatatgctccatatacaatattttcttttatggtaccaccaaacaatgttggttcttgactcacgagtgcaatgtgtttccttaatgaccttatatta |
101 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||||||||| |||| ||| || |||||||||||||||| |||| |
|
|
| T |
2451027 |
atcatatgctccatatgcaatattctcccttatggtaccaccaaacaatgttggctcttgactcacaagtgaaatatgcttccttaatgaccttagatta |
2450928 |
T |
|
| Q |
102 |
taagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcgttgatttcccagaaccacttt |
201 |
Q |
| |
|
|||| ||||| || || || ||||| ||||||||||||| | | |||||| || |||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
2450927 |
taagactttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatgattgtcgattttccagaaccacttt |
2450828 |
T |
|
| Q |
202 |
cccc |
205 |
Q |
| |
|
|||| |
|
|
| T |
2450827 |
cccc |
2450824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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