View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_high_27 (Length: 244)
Name: NF5763_high_27
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 27230321 - 27230422
Alignment:
| Q |
6 |
agatatattatcatctctcgtgattattactctgtattactatagttgttatactttacaataaatatatttttagaaatttgttgctattagagaaaaa |
105 |
Q |
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| T |
27230321 |
agatatattatcatatctcgtgattattactctgtattactatagttgttacactttacaataaatatatttttagaaatttgttgctattagagaaaaa |
27230420 |
T |
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| Q |
106 |
ta |
107 |
Q |
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|| |
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| T |
27230421 |
ta |
27230422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 27230956 - 27231033
Alignment:
| Q |
159 |
attatttatattgaaattgatctatataatactcaaaatatttgattttagtctcttaaataagacctaaaatgaata |
236 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27230956 |
attatttatattgaaattgatctatataatacgtacaatatttgattttagtctcttaaataagacctaaaatgaata |
27231033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 27236940 - 27236983
Alignment:
| Q |
193 |
aaaatatttgattttagtctcttaaataagacctaaaatgaata |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27236940 |
aaaatatttgattttagtctcttaaataagacctaaaatgaata |
27236983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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