View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_high_5 (Length: 413)
Name: NF5763_high_5
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 37176611 - 37176804
Alignment:
| Q |
21 |
taagttgcaatgaaacaggaaacaattgttaaggtagagaaattaaattcataattctttcatatatcaaaaaattcaaaatcctatttaccttctgtac |
120 |
Q |
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| T |
37176611 |
taagttgcaatgaaacaggaaacaattgttaaggtagagaaattaaattcataattctttcatatatcaaaaaattcaaaatcctatttaccttctgtac |
37176710 |
T |
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| Q |
121 |
aagannnnnnnnnnnnnnnnnnnnnacaaatctaactaactaataactatttctaattaatatcacaaagaaatgcaacctaaattatgctacc |
214 |
Q |
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| T |
37176711 |
aagactctctctctctagtctctctacaaatctaactaactaataactatttctaattaatatcacaaagaaatgcaacctaaattatgctacc |
37176804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 275 - 405
Target Start/End: Original strand, 37176865 - 37176995
Alignment:
| Q |
275 |
gtgactatactactgaacaatggattcttccaccaaaaacctgatgagaaatcaaactatctcttgttgtgtaaagggttggatcctgtaggcactttgc |
374 |
Q |
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| T |
37176865 |
gtgactatactactgaacaatggattcttccaccaaaaacctgatgagaaatcaaactatctcttgttgtgtaaagggttggatcctgtaggcactttgc |
37176964 |
T |
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| Q |
375 |
gtttctgagacttgaattctttacctttgct |
405 |
Q |
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| T |
37176965 |
gtttctgagacttgaattctttacctttgct |
37176995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 405
Target Start/End: Complemental strand, 36207488 - 36207413
Alignment:
| Q |
330 |
actatctcttgttgtgtaaagggttggatcctgtaggcactttgcgtttctgagacttgaattctttacctttgct |
405 |
Q |
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| T |
36207488 |
actatttcttattgtgtaaagggttggctcctgtaggtactcttcgtttctgagactcaaactctttacctctgct |
36207413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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