View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_11 (Length: 335)
Name: NF5763_low_11
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 327
Target Start/End: Complemental strand, 40043661 - 40043337
Alignment:
| Q |
3 |
caataaatgtgtcatttagttaataatttcaaccgtctgacctaaatcaacgattgagataatttaaaagtaatttttagtaaagtgtaatttgagatgt |
102 |
Q |
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| T |
40043661 |
caataaatgtgtcatttagttaataatttcaaccgtccgacctaaatcaacgattgagataatttaaaagtagtttttagtaatgtgtaatttgagatgt |
40043562 |
T |
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| Q |
103 |
tcggtctcaaatc-ataattgagattgactatcgtgtaaaactatgtttcattattcgtatatggaatccaaattcatctttgaannnnnnnnnnggttg |
201 |
Q |
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| T |
40043561 |
tcggtctcaaatcaataatcgagattgactatcgtgtaaaactatgtttcattattcatatatggaatccaaattcatttttga--ttatttttttgttg |
40043464 |
T |
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| Q |
202 |
atttgactagaccacaagctttcaaacaagaaaattgttagctattaggatttgactt-aaagaatgattaacattgttataaattataatattattcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40043463 |
atttgactagaccacaagctttcaaacaagaaaattgttagctattaggatttgacttaaaagaatgattaacattgttataaattataatattattcaa |
40043364 |
T |
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| Q |
301 |
gtcaacttgacatcattcatattcttc |
327 |
Q |
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| T |
40043363 |
gtcaacttgacatcattcattttcttc |
40043337 |
T |
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