View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_13 (Length: 319)
Name: NF5763_low_13
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 35047480 - 35047176
Alignment:
| Q |
1 |
tagggcatctccattgtattccacaatgttctacaagttcaagaacatgatctagtttcattgtccattgaagttgggtgatgtgaaagtcaggtcggag |
100 |
Q |
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| T |
35047480 |
tagggcatctccattgtattccacaatgttctacaagttcaagaacatgatctagtttcattgtccattgaagttggatgatgtgaaagtcaggtcggag |
35047381 |
T |
|
| Q |
101 |
aactgttcctcaaggaaaacatgttccagcagctatacgtcacaaaaaagtaggaagaaagggaaagaaaatccagatttgaaaatacgttaacgacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047380 |
aactgttcctcaaggaaaacatgttccagcagctatacgtcccaaaaaagtaggaagaaagggaaagaaaatccagatttgaaaatacgttaacgacaaa |
35047281 |
T |
|
| Q |
201 |
gcttgagttttttgaaaatccagatttatcatctattagagtnnnnnnnnnnnnnnngaaaggatctattagagtaaaaatagatgataaatctcacatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047280 |
gcttgagttttttgaaaatccagatttatcatctattagaataaattttttttttttgaaaggatctattagagtaaaaatagatgataaatctcacatg |
35047181 |
T |
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| Q |
301 |
atatt |
305 |
Q |
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||||| |
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| T |
35047180 |
atatt |
35047176 |
T |
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