View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5763_low_14 (Length: 319)

Name: NF5763_low_14
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5763_low_14
NF5763_low_14
[»] chr7 (5 HSPs)
chr7 (1-72)||(33249369-33249440)
chr7 (252-302)||(36681960-36682010)
chr7 (1-70)||(14238549-14238618)
chr7 (147-176)||(14238692-14238721)
chr7 (147-176)||(33249515-33249544)
[»] chr4 (3 HSPs)
chr4 (1-70)||(33572180-33572249)
chr4 (145-176)||(33572078-33572109)
chr4 (145-176)||(53841486-53841517)
[»] chr1 (2 HSPs)
chr1 (1-70)||(5042031-5042100)
chr1 (145-176)||(5042172-5042203)
[»] chr5 (2 HSPs)
chr5 (147-176)||(32657984-32658013)
chr5 (1-42)||(32658087-32658128)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 33249369 - 33249440
Alignment:
Q  1 tgtgtaagaataatcaatttcatttcttaattaaattagaatnnnnnnnctgcattaatttatatatgaatc 72  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  33249369 tgtgtaagaataatcaatttcatttcttaattaaattagaataaaaaaactgcattaatttatatatgaatc 33249440  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 36682010 - 36681960
Alignment:
Q  252 aaacacacctttaaagaggtaaggaagggaccaaaacaaaaacactcttta 302  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  36682010 aaacacacccttaaagaggaaaggaagggaccaaaacaaaaacactcttta 36681960  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14238549 - 14238618
Alignment:
Q  1 tgtgtaagaataatcaatttcatttcttaattaaattagaatnnnnnnnctgcattaatttatatatgaa 70  Q
    ||||||| |||||||||||  |||| ||||||||||||||||       |||||||||||||||||||||    
T  14238549 tgtgtaaaaataatcaattcaattttttaattaaattagaataaaaaaactgcattaatttatatatgaa 14238618  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 176
Target Start/End: Original strand, 14238692 - 14238721
Alignment:
Q  147 atattttagtcttttcaaaaattaaacaca 176  Q
    ||||||||||||||||||||||||||||||    
T  14238692 atattttagtcttttcaaaaattaaacaca 14238721  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 176
Target Start/End: Original strand, 33249515 - 33249544
Alignment:
Q  147 atattttagtcttttcaaaaattaaacaca 176  Q
    ||||||||||||||||||||||||||||||    
T  33249515 atattttagtcttttcaaaaattaaacaca 33249544  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 33572249 - 33572180
Alignment:
Q  1 tgtgtaagaataatcaatttcatttcttaattaaattagaatnnnnnnnctgcattaatttatatatgaa 70  Q
    ||||||| |||||||||||  |||||||||||||||||||||       |||||||||||||||||||||    
T  33572249 tgtgtaaaaataatcaattcaatttcttaattaaattagaataaaaaaactgcattaatttatatatgaa 33572180  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 176
Target Start/End: Complemental strand, 33572109 - 33572078
Alignment:
Q  145 ggatattttagtcttttcaaaaattaaacaca 176  Q
    ||||||||||||||||||||||||||||||||    
T  33572109 ggatattttagtcttttcaaaaattaaacaca 33572078  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 53841486 - 53841517
Alignment:
Q  145 ggatattttagtcttttcaaaaattaaacaca 176  Q
    ||||||||||||||||||||||||||||||||    
T  53841486 ggatattttagtcttttcaaaaattaaacaca 53841517  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5042031 - 5042100
Alignment:
Q  1 tgtgtaagaataatcaatttcatttcttaattaaattagaatnnnnnnnctgcattaatttatatatgaa 70  Q
    ||||||| |||||||||||  |||||||||||||||||||||       |||||||||||||||||||||    
T  5042031 tgtgtaaaaataatcaattcaatttcttaattaaattagaataaaaaaactgcattaatttatatatgaa 5042100  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 176
Target Start/End: Original strand, 5042172 - 5042203
Alignment:
Q  145 ggatattttagtcttttcaaaaattaaacaca 176  Q
    ||||||||||||||||||||||||||||||||    
T  5042172 ggatattttagtcttttcaaaaattaaacaca 5042203  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 176
Target Start/End: Complemental strand, 32658013 - 32657984
Alignment:
Q  147 atattttagtcttttcaaaaattaaacaca 176  Q
    ||||||||||||||||||||||||||||||    
T  32658013 atattttagtcttttcaaaaattaaacaca 32657984  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32658128 - 32658087
Alignment:
Q  1 tgtgtaagaataatcaatttcatttcttaattaaattagaat 42  Q
    ||||||| |||||||||||  |||||||||||||||||||||    
T  32658128 tgtgtaaaaataatcaattcaatttcttaattaaattagaat 32658087  T

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