View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_15 (Length: 309)
Name: NF5763_low_15
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 23826981 - 23827271
Alignment:
| Q |
1 |
acactctatcttgctatatatagagactcttttcgcaataatggcatgtcaagtgtttgaacgtgttaatgtctaaaccaatactgcactgacatacgta |
100 |
Q |
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| T |
23826981 |
acactctatcttgctatatatagcgacacttttcgcaataatggcatgtcaagtgtttgaacgtgttaatgtctaaaccaatactacactgacatacgta |
23827080 |
T |
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| Q |
101 |
attacattcgattcaatcacttgcattttattaaattgttgtgtatacacgcattagtgcaatttcgtgtctatgttagtgcttcatcgatcttgctttt |
200 |
Q |
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| T |
23827081 |
attacattcgattcaatcacttgcattttattaaattgttgtgtatacacgcattagtgctatttcgtgtctgtgttagtgcttcatcgatcttgctttt |
23827180 |
T |
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| Q |
201 |
gtgggccaccacagtatattcacccatattagttccctacatataaacaacctttttcagctctcctccttgctttttctcttgtctatat |
291 |
Q |
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| T |
23827181 |
gtgggccaccacagtatattcacccatattagttccctacatataaaccacctttttcagctctcctccttgctttttctcttgtctatat |
23827271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 292
Target Start/End: Original strand, 23831229 - 23831319
Alignment:
| Q |
202 |
tgggccaccacagtatattcacccatattagttccctacatataaacaacctttttcagctctcctccttgctttttctcttgtctatatt |
292 |
Q |
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||||||||||||| | | ||| |||||||||||| |||||||| |||| ||| |||| ||||||||||| || ||| |||| | |||||| |
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| T |
23831229 |
tgggccaccacagaagactcatccatattagttctctacatatcaacactcttcttcacctctcctccttcctgtttttcttctttatatt |
23831319 |
T |
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