View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_19 (Length: 292)
Name: NF5763_low_19
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_19 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 23826685 - 23826968
Alignment:
| Q |
10 |
aagaatatccagtggactagaaagttttgcaaacgatattaaggagtttgtggaaaaaagtttcc-tttccaaacaaaacnnnnnnnggggtccattaca |
108 |
Q |
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| T |
23826685 |
aagaaaatccagtggactagaaagttttgcaaaccatattaaggagtttgtagaaaaaagtttccctttccaaacaaaacaaaaaaaggggtcccttaca |
23826784 |
T |
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| Q |
109 |
gttacaccatgcttctgttcccataacatgtactacaatacaatgaatgtgatgttacatgcatgaatcaccatactcactttccttcgttctcagcatc |
208 |
Q |
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| T |
23826785 |
gttacaccatgcttctgttcccataacatgcactacaatacaatgaatgtgatgttacatgcatgaatcaccatactcactttccttcgttctcagcatc |
23826884 |
T |
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| Q |
209 |
tttctcatatgtctttactaatccatccaaacttttatagcttaagcttttagtcaagttgctcaacttttttagtactgttat |
292 |
Q |
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| T |
23826885 |
tttctcatatgtctttactaatccatccaaacttttatagcttaagcttttagtctagttgctcaacttttttcgtactgttat |
23826968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 23817813 - 23817871
Alignment:
| Q |
222 |
tttactaatccatccaaacttttatagcttaagcttttagtcaagttgctcaacttttt |
280 |
Q |
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| T |
23817813 |
tttactaatccatccaaacttttttagcttaactttttagtcaagtagctcaacctttt |
23817871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 23817301 - 23817341
Alignment:
| Q |
96 |
ggggtccattacagttacaccatgcttctgttcccataaca |
136 |
Q |
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| T |
23817301 |
ggggtccattacagttacaccatgcttctattcccataaca |
23817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 23830920 - 23830952
Alignment:
| Q |
166 |
catgcatgaatcaccatactcactttccttcgt |
198 |
Q |
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| T |
23830920 |
catgcatgaatcaccatactcaccttccttcgt |
23830952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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