View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_2 (Length: 521)
Name: NF5763_low_2
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 118 - 503
Target Start/End: Complemental strand, 28930785 - 28930387
Alignment:
| Q |
118 |
ttgtctaaagcccccaagaccagatagacagtaactatttgtcatggtgctatatgagtgtaggttttggattttataatacagccaa------------ |
205 |
Q |
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| T |
28930785 |
ttgtctaaagcccccaagaccagatagacagtaactatttgtcatggtgctatatgagtgtaggttttggattttataatacagccaaagattttcaaag |
28930686 |
T |
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| Q |
206 |
-tagtgattttgttttctaagcatatattaggagaggttagaattaattttataaacctttcaattttggtgtatttcaatttgtatattgatgttgagt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28930685 |
gtagtgattttgttttctaagcatatattaggagaggttagaattaattttataaacctttcaattttggtgtatttcaatttgtatatggatgttgagt |
28930586 |
T |
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| Q |
305 |
tttgtctacacttgcaaagtgcaaaatagctatgcagatgtcgtctgtttgatcaatgtgttgttgattttatgaatctttcaattacaaatcagcttta |
404 |
Q |
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| T |
28930585 |
tttgtctacacttgcaaagtgcaaaatagctatgcagatgtcgtctgtttgatcaatgtgttgttgattttatgaatctttcaattacaaatcagcttta |
28930486 |
T |
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| Q |
405 |
aataagtgttttcattgatttagatgaaacgatgaagaatgataagtgtgtcacagttaccgtaaggaaattgattttgcatggtaagtgagtgaacca |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28930485 |
aataagtgttttcattgatttagatgaaacgatgaagaatgataagtgtgtcacagttaccgtaaggaaattgattttgcatggtaagtgagtgaacca |
28930387 |
T |
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