View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_23 (Length: 265)
Name: NF5763_low_23
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_23 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 2592531 - 2592779
Alignment:
| Q |
14 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2592531 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttattgagaaaggaacacattcatctttgttgtctaaagggc |
2592630 |
T |
|
| Q |
114 |
caagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgattcttcacatgaaatcaactaaataaacaatatcaagtt |
213 |
Q |
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|||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592631 |
caagtggagcatattactctttgataagtctaaaaataagaccaaccaacataattattgattcttcacatgaaatcaactaaataaacaatatcaagtt |
2592730 |
T |
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| Q |
214 |
tttcatgtttgaaggggagaagcaacaaagaggagttgatgatgtagttgtt |
265 |
Q |
| |
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||| |||||| |||| ||||||||||||| | |||||||||||||||||| |
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| T |
2592731 |
tttaatgttttaagg---gaagcaacaaagatgggttgatgatgtagttgtt |
2592779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 2624075 - 2624311
Alignment:
| Q |
14 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
2624075 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaatggaacacattcatccttgttgtctaaagggc |
2624174 |
T |
|
| Q |
114 |
caagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgattcttcacatgaaatcaactaaataaacaatatcaagtt |
213 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| || ||||||||||||||| ||| |
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| T |
2624175 |
caagtggagcatattactctttgataagtctacaaaaaagaccaaccaacataattgttgattctccacatgaaattaaataaataaacaatatcttgtt |
2624274 |
T |
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| Q |
214 |
tttcatgtttgaaggggagaagcaacaaagaggagttg |
251 |
Q |
| |
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||| ||||||||| |||||||| |||||||| |||||| |
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| T |
2624275 |
tttaatgtttgaa-gggagaagtaacaaagatgagttg |
2624311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 2672114 - 2671885
Alignment:
| Q |
14 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
113 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2672114 |
cataggttgagtactatacaaaattgcgatttgattgctgttttagacaagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
2672015 |
T |
|
| Q |
114 |
caagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgattcttcacatgaaatcaactaaataaacaatatcaagtt |
213 |
Q |
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|||||||| | |||||||||||| |||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2672014 |
caagtggagcttattactctttggtaagtctacaaagaagaccaaccaacattactattgattcttcacatgaaatcaactaaataaacaatatcaagtt |
2671915 |
T |
|
| Q |
214 |
tttcatgtttgaaggggagaagcaacaaaga |
244 |
Q |
| |
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||||||| ||||| ||||||||||||||||| |
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| T |
2671914 |
tttcatggttgaa-gggagaagcaacaaaga |
2671885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 2440585 - 2440785
Alignment:
| Q |
14 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
113 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440585 |
cataggttgagtactattcaaaactgtgatttgattgctgttttggataagggaattgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
2440684 |
T |
|
| Q |
114 |
caagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgattcttcacatgaaatcaactaaataaacaatatcaagtt |
213 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||||||||||| || ||||||| |||||||| |||||||| ||||||||||||| |||||||| |
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| T |
2440685 |
caagtggagcatattactctttggtaagtctacaaagaagaccaaacaatataattgctgattcttgccatgaaattaactaaataaacatgatcaagtt |
2440784 |
T |
|
| Q |
214 |
t |
214 |
Q |
| |
|
| |
|
|
| T |
2440785 |
t |
2440785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 2568739 - 2568489
Alignment:
| Q |
14 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
113 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||| ||||||| |
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| T |
2568739 |
cataggttgagtactatacaaaattgtgatttgattgctgttttggataagggcattgttgttgagaaaggaacacattcaaatttattgtcaaaagggc |
2568640 |
T |
|
| Q |
114 |
caagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgattcttcacatgaaatcaactaaataaacaatatcaagtt |
213 |
Q |
| |
|
||||||| | |||||||||||| ||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
2568639 |
caagtggtgcttattactctttggtaagtctgcaaagaagaccaaacaatttaatttcgtattcttcacatgaaatcaactaaataaacaatactaagtt |
2568540 |
T |
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| Q |
214 |
tttcatgtttgaaggggagaagcaacaaagaggagttgatgatgtagttgtt |
265 |
Q |
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||||||||||||| ||||||||||| ||||| || | ||||||||| ||||| |
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| T |
2568539 |
tttcatgtttgaa-gggagaagcaagaaagaagaatcgatgatgtacttgtt |
2568489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 2640954 - 2640705
Alignment:
| Q |
14 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
113 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| || | |
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| T |
2640954 |
cataggttgagtactatacaaaattgtgatttgattgctgttttggataaggggattgttgttgaaaaaggaacacattcatctttgttgtctttgggac |
2640855 |
T |
|
| Q |
114 |
caagtggaacatattactctttgataagtctacaaagaagaccaacgaacataattgttgattcttcacatgaaatcaactaaataaacaatatcaagtt |
213 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||| || | |||||||| |||||||||||||||||||||||||||||| || | || |
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|
| T |
2640854 |
caagtggagtttattactctttagtaagtctacaaagaagaccaaccaatacaattgttggttcttcacatgaaatcaactaaataaacaaggtcga-tt |
2640756 |
T |
|
| Q |
214 |
tttcatgtttgaaggggagaagcaacaaagaggagttgatgatgtagttgtt |
265 |
Q |
| |
|
|| |||||||||| || |||||| ||||| | || || |||||| ||||||| |
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|
| T |
2640755 |
ttccatgtttgaa-ggaagaagctacaaaaaagaatttatgatggagttgtt |
2640705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 2596298 - 2596070
Alignment:
| Q |
14 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
113 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| ||| || | |
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| T |
2596298 |
cataggttgagtactatacaaaattgtgatttgattgctgtcttggataagggaattgttgttgagaaaggaacacattcgtctttgttatctttgggac |
2596199 |
T |
|
| Q |
114 |
caagtggaacatattactctttgataagtctacaaagaagac--caacgaacataattgttgattcttcacatgaaatcaactaaataaacaatatcaag |
211 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||| || || |
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| T |
2596198 |
caagtggagtttattactctttggtaagtctacaaagaagactataaccaatacaattgttgattcttcacatgaaatcaactaaataaacaaggtccag |
2596099 |
T |
|
| Q |
212 |
tttttcatgtttgaaggggagaagcaacaaa |
242 |
Q |
| |
|
||| |||||||||| ||||||||| ||||| |
|
|
| T |
2596098 |
-tttccatgtttgaa-gggagaagctacaaa |
2596070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 2451307 - 2451450
Alignment:
| Q |
14 |
cataggttgagtactatccaaaactgtgatttgattgctgttttggataagggaagtgttgttgagaaaggaacacattcatctttgttgtctaaagggc |
113 |
Q |
| |
|
||||||||||||||||| ||||| |||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
2451307 |
cataggttgagtactatacaaaattgtgatatgattgttgttttggataagggtagtgttattgagaaaggaacacattcatctttgttgtctaaaggac |
2451406 |
T |
|
| Q |
114 |
caagtggaacatattactctttgataagtctacaaagaagacca |
157 |
Q |
| |
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|||||||| | ||||||||| || |||||||||||||||||||| |
|
|
| T |
2451407 |
caagtggagcttattactctatggtaagtctacaaagaagacca |
2451450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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