View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_25 (Length: 255)
Name: NF5763_low_25
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 49525490 - 49525250
Alignment:
| Q |
11 |
caaaggaaaactacatgcaaaacagaaacacacacaatgcacgataatgaaggaggggctaagaaaaatctagatacaaataagattaatagaaaagtaa |
110 |
Q |
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| T |
49525490 |
caaaggaaaactacatgcaaaacagaaacacacataatgcactataatgaaggaggggctaagaaaaatctagatacaaataagattaatagaaaagtaa |
49525391 |
T |
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| Q |
111 |
ggaaaaagaaagttttattaccgtaggcgaaagatcatatccaacggcattagtccccactcctgacaagagcagcagaggatgatttcttgtaggtgcc |
210 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49525390 |
ggaaaaagaaaggtttattaccgtaggcgaaagatcatatccaacggcattagtccccactcctgacaagagcagcagaggatgatttcttgtaggtgcc |
49525291 |
T |
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| Q |
211 |
tgcaaaacaagtaccaaattcaattagagatcataaatatt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
49525290 |
tgcaaaacaagtaccaaattcaattagagatcataaatatt |
49525250 |
T |
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