View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_26 (Length: 254)
Name: NF5763_low_26
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 116853 - 116613
Alignment:
| Q |
1 |
cataggcaactccaacaaccactcaacatttaattgcattgtcatttgaaaatctattaaaaaataatgagggtatgtttaagctagcaaataagagaat |
100 |
Q |
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| T |
116853 |
cataggcaactccaacaaccactcaacatttaattgcattgtcatttgaaaatctattaaaaaataatgagggtatgtttaagctagcaaataagagaat |
116754 |
T |
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| Q |
101 |
gcttgagatgggcatcgaaatcgattctttcccagtcacgaaaaatggccatggtatcattctctgagctcacaagt----gtagaataactcggaaatg |
196 |
Q |
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| T |
116753 |
gcttgagatggacatcgaaatcgattctttcccagtcacgaaaaatggccatggtatcattctctgagcccacaagtgtacgtagaacaactcggaaagg |
116654 |
T |
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| Q |
197 |
gaagaaattaatcaagcaggatgggcaatgtaaatccatat |
237 |
Q |
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| T |
116653 |
gaagaaattaatcaagcaggatgagcaatgtaaatccatat |
116613 |
T |
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