View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_27 (Length: 252)
Name: NF5763_low_27
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_27 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 23315426 - 23315193
Alignment:
| Q |
1 |
atcccttggtaataaaatggttgcattaaatgactcactgagattgttcatcaagacatcacatttagtatgaaaagaaaaggcatgcttacaccatcct |
100 |
Q |
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| T |
23315426 |
atcccttggtaataaaatggttgcattaaatgactcactgagattgttcatcaagacatcacatttagtatgaaaagaaaaggcatgcttacaccatccc |
23315327 |
T |
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| Q |
101 |
cttttgtcaacagcagctaaccattcatgtgccttgggattagcttccttcagcaactgcatcttttcttcccaagcttcaacataagtagttttggcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23315326 |
cttttgtcaacagcagctaaccattcatgtgccttgggattagcttccttcagcaactgcatcttttcttcccaagcttcaacataagtagccttggcag |
23315227 |
T |
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| Q |
201 |
cacccatcatcaagtccctaattagtgtacctcc |
234 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
23315226 |
cacccatcattaagtccctaattagtgtacctcc |
23315193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 20654125 - 20654075
Alignment:
| Q |
43 |
attgttcatcaagacatcacatttagtatgaaaagaaaaggcatgcttaca |
93 |
Q |
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| T |
20654125 |
attgttcatcaatacatcacatttaggataaaaactaaaggcatgcttaca |
20654075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 22056897 - 22056856
Alignment:
| Q |
56 |
acatcacatttagtatgaaaagaaaaggcatgcttacaccat |
97 |
Q |
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| T |
22056897 |
acatcacatttagggtaaaaagaaaaggcatgcttacaccat |
22056856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 1015 - 974
Alignment:
| Q |
56 |
acatcacatttagtatgaaaagaaaaggcatgcttacaccat |
97 |
Q |
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| T |
1015 |
acatcacatttagggtaaaaagaaaaggcatgcttacaccat |
974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 19395236 - 19395195
Alignment:
| Q |
56 |
acatcacatttagtatgaaaagaaaaggcatgcttacaccat |
97 |
Q |
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| T |
19395236 |
acatcacatttagggtaaaaagaaaaggcatgcttacaccat |
19395195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 19396103 - 19396062
Alignment:
| Q |
56 |
acatcacatttagtatgaaaagaaaaggcatgcttacaccat |
97 |
Q |
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| T |
19396103 |
acatcacatttagggtaaaaagaaaaggcatgcttacaccat |
19396062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 31812564 - 31812523
Alignment:
| Q |
56 |
acatcacatttagtatgaaaagaaaaggcatgcttacaccat |
97 |
Q |
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| T |
31812564 |
acatcacatttagggtaaaaagaaaaggcatgcttacaccat |
31812523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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