View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_29 (Length: 245)
Name: NF5763_low_29
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 46452044 - 46451813
Alignment:
| Q |
1 |
tacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452044 |
tacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgactt |
46451945 |
T |
|
| Q |
101 |
ggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451944 |
ggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttga |
46451845 |
T |
|
| Q |
201 |
tcaaacaaaccctgtccatttgctatttccac |
232 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
46451844 |
tcaaacaaaccctgtccttttgctatttccac |
46451813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 46344512 - 46344743
Alignment:
| Q |
1 |
tacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgactt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344512 |
tacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgactt |
46344611 |
T |
|
| Q |
101 |
ggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttga |
200 |
Q |
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| T |
46344612 |
ggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttga |
46344711 |
T |
|
| Q |
201 |
tcaaacaaaccctgtccatttgctatttccac |
232 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
46344712 |
tcaaacaaaccctgtccttttgctatttccac |
46344743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 46463012 - 46462781
Alignment:
| Q |
1 |
tacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgactt |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463012 |
tacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgactt |
46462913 |
T |
|
| Q |
101 |
ggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462912 |
ggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttga |
46462813 |
T |
|
| Q |
201 |
tcaaacaaaccctgtccatttgctatttccac |
232 |
Q |
| |
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||||||||||||||||| |||||||||||||| |
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| T |
46462812 |
tcaaacaaaccctgtccttttgctatttccac |
46462781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 46466434 - 46466203
Alignment:
| Q |
1 |
tacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgactt |
100 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |||||||||||| |
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| T |
46466434 |
tacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgactt |
46466335 |
T |
|
| Q |
101 |
ggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttga |
200 |
Q |
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||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
46466334 |
agactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttga |
46466235 |
T |
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| Q |
201 |
tcaaacaaaccctgtccatttgctatttccac |
232 |
Q |
| |
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|| ||||||||||| || ||||||| |||||| |
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| T |
46466234 |
tcgaacaaaccctgcccttttgctaattccac |
46466203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 46471639 - 46471408
Alignment:
| Q |
1 |
tacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgactt |
100 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |||||||||||| |
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| T |
46471639 |
tacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttgactt |
46471540 |
T |
|
| Q |
101 |
ggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttga |
200 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
46471539 |
agactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttga |
46471440 |
T |
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| Q |
201 |
tcaaacaaaccctgtccatttgctatttccac |
232 |
Q |
| |
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|| ||||||||||| || ||||||| |||||| |
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| T |
46471439 |
tcgaacaaaccctgcccttttgctaattccac |
46471408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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