View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_33 (Length: 231)
Name: NF5763_low_33
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_33 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30419020 - 30419250
Alignment:
| Q |
1 |
cttccatctcagatgaaacctccttattcacaaacactgtaagaaaagacttaccttgttggaccttcctctccttccctgtaaagcctcaccattcgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30419020 |
cttccatctcagatgaaacctccttattcacaaacactgtcagaaaagacttaccttgttggaccttcctctccttccctgtaaagcctcgccattcgtt |
30419119 |
T |
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| Q |
101 |
atttcctttatgtttgccatagtcctgtcctaacccccaatcattcttatcaagccttgagaggttgaccttacgattgaaacacctacaccataccgat |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30419120 |
atttcctttatgtttgccacagtcctgtcctaacccccaatcattcttatcaagccttgagaggttgaccttgcgattgaaacacctacaccataccgat |
30419219 |
T |
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| Q |
201 |
ttcagtttcttactccacacatctacttcct |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30419220 |
ttcagtttcttactccacacatctacttcct |
30419250 |
T |
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