View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5763_low_34 (Length: 213)
Name: NF5763_low_34
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 35786536 - 35786730
Alignment:
| Q |
1 |
tatctgattcttaccaatagatacctacttgaacattgccaaaatgaagaccattttcagatcaaattaaacaaaaatcaaaatagtttcatgtacaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35786536 |
tatctgattcttaccaatagatacctacttgaacattgccaaaatcaagaccattttcagatcaaattaaacaaaaatcaaaatagtttcatgtacaaaa |
35786635 |
T |
|
| Q |
101 |
gatagactaatgaaaggaaagttggcttcctgtaagctacatcaatataatgaggtagggttttgtttacaatgtgtcatatcaagattcgatta |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35786636 |
gatagactaatgaaaggaaagttggcttcctgtaagctacatcaatataatgaggtagggttttgtttacaatgtgtcatatcaagattcgatta |
35786730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 35761609 - 35761802
Alignment:
| Q |
2 |
atctgattcttaccaatagatacctacttgaacattgccaaaatgaagaccattttcagatcaaattaaacaaaaatcaaaatagtttcatgtacaaaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| ||| | ||||| |||||||||||||||| |
|
|
| T |
35761609 |
atctgattcttaccaatagatacctacttgaacattgccaaaatcaagaccattttcatatcaaatttaaccaaacttaaaatggtttcatgtacaaaag |
35761708 |
T |
|
| Q |
102 |
atagactaatgaaaggaaagttggcttcctgtaagctacatcaatataatgaggtagggttttgtttacaatgtgtcatatcaagattcgatta |
195 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35761709 |
atagactaaagaaaggaaagttagcttcctgtaagcatcttcaatttaatgaggtagagttttgtttacaatgtgtcatatcaagattcgatta |
35761802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 35756266 - 35756373
Alignment:
| Q |
13 |
accaatagatacctacttgaacattgccaaaatgaagaccattttcagatcaaat-taaacaaaaatcaaaatagtttcatgtacaaaagatagactaat |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || | |||||| |||||||| ||| |||||||||| ||| ||||| ||||| ||||||||||||| |
|
|
| T |
35756266 |
accaatagatacctacttgaacatcgccaaaatcaata-tattttctgatcaaatgtaaccaaaaatcaatataatttcaggtacataagatagactaat |
35756364 |
T |
|
| Q |
112 |
gaaaggaaa |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
35756365 |
aaaaggaaa |
35756373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 35799831 - 35799902
Alignment:
| Q |
28 |
cttgaacattgccaaaatgaagaccattttcagatcaaattaaacaaaaatcaaaatagtttcatgtacaaaa |
100 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||| ||| | |||||||| || ||||||||||||| |
|
|
| T |
35799831 |
cttgaacatggccaaaatcaagac-attttcagatcaaatataaccataatcaaaacagattcatgtacaaaa |
35799902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University