View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5763_low_4 (Length: 450)
Name: NF5763_low_4
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 46452712 - 46452278
Alignment:
| Q |
16 |
attttggctctgattagtgcgctctgttgattcttctttaagaattgcaccaaacgcgtcaccaaactagagtattaactacattgttgtttttaatgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46452712 |
attttggctctgattagtgcgctctgttgattcttctttaagaattgcaccaaacgcgtcaccaaactagagtattaactacattgttgtttttaatgtt |
46452613 |
T |
|
| Q |
116 |
gatgatgagttcatcataggatctaataaactatgaagtagaagtttagcacactcatttttcactgctttgaaatatgaaaatgttaagctaaacaaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46452612 |
gatgatgagttcatcataggatctaataaactatgaagtagaagtttagcacactcatttttcactgctttgaaatatgaaaatgttaagctaaacaaat |
46452513 |
T |
|
| Q |
216 |
tgtgtatccaaggtgttcatgtgctttgttatttacttgttttcactcattcgaagggtgttataccctctctaatagagtattttattgtcaagtatta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46452512 |
tgtgtatccaaggtgttcatgtgctttgttatttacttgttttcactcattcgaagggtgttataccctctctaatagagtattttattgtcaagtatta |
46452413 |
T |
|
| Q |
316 |
tgcatttgtacaaattcatcaaatcatgccataggagtgaataattactctccctatcttaaaaattaaaactaagaaaaacctcaaagagaaactacta |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46452412 |
tgcatttgtacaaattcatcaaatcatgccataggagtgaataattactctccctctcttaaaaattaaaactaagaaaaacctcaaagagaaactacta |
46452313 |
T |
|
| Q |
416 |
tttatatctatagattggtgttggcttctaaccgc |
450 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46452312 |
tttatatttatagattggtgttggcttctaaccgc |
46452278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 9443446 - 9443514
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
176 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
9443446 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt |
9443514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 27878063 - 27878131
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
176 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
27878063 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt |
27878131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 8480149 - 8480213
Alignment:
| Q |
98 |
attgttgtttttaatgttgatgatgagttcatcata-ggatctaataaactatgaagtagaagtt |
161 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| | ||| |||||| ||||||||||||| |
|
|
| T |
8480149 |
attgttgtttgtaatgttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagtt |
8480213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 41719373 - 41719305
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
176 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
41719373 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt |
41719305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 34352976 - 34352910
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatt |
174 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||| |
|
|
| T |
34352976 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatt |
34352910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 42266866 - 42266798
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
176 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
42266866 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt |
42266798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 48701175 - 48701243
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
176 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
48701175 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt |
48701243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 30949537 - 30949605
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcata-ggatctaataaactatgaagtagaagtttagcacactcatttt |
176 |
Q |
| |
|
|||||||||||||||||| |||||| | |||| |||||| || |||||||||| ||||| |||||||| |
|
|
| T |
30949537 |
taatgttgatgatgagttgatcatacgaatctggtaaactctggagtagaagttcagcacgctcatttt |
30949605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 5822629 - 5822697
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
176 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
5822629 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt |
5822697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 2816617 - 2816685
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcata-ggatctaataaactatgaagtagaagtttagcacactcatttt |
176 |
Q |
| |
|
|||||||||||||||||| |||||| | |||| |||||| | ||||||||||| ||||| |||||||| |
|
|
| T |
2816617 |
taatgttgatgatgagttgatcatacgaatctggtaaactctaaagtagaagttcagcacgctcatttt |
2816685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 826442 - 826374
Alignment:
| Q |
109 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
176 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
826442 |
taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt |
826374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University