View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_5 (Length: 422)
Name: NF5763_low_5
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 23315440 - 23315842
Alignment:
| Q |
1 |
ccatgtttgagtggattagaacttacttaatggggaggtttgctatgttgaaagaaaaagtagggaattatagaggtgatatcatgcctaaacctatgag |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23315440 |
ccatgtttgagtggattagaacttacttaatagggaggtttgctatgttgaaagaaaatgtagggaattatagaggtgatatcatgcctaaacctatgag |
23315539 |
T |
|
| Q |
101 |
aagacttgatagggaaatagaaatgagtggtaattggtttgctacttgggctggtgggttgaagtttgaggttacacatagcctaatgtatgataagttt |
200 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23315540 |
aatacttgatagggaaatagagatgagtggtaattggtttgctacttaggctggtgggttgaagtttgaggttacacatagcctaatgtatgataagttt |
23315639 |
T |
|
| Q |
201 |
gtagttgatattgatnnnnnnncatgctcttgcaatttctgggaattggttgggatcccttgtaggcatgatgttgcagctattgtgatgaagggtgatg |
300 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23315640 |
gtagttgatattgataaaaaaacatgctcttacaatttctgggaattggttgggatcccttgtaggcatgctgttgcagctattgtgatgaagggtgatg |
23315739 |
T |
|
| Q |
301 |
atcctgcataatatgtgcataggtactatagcaaggtgtattatgaagattgctatgctcaggttatatcccctattaatggccagaataaatggcctaa |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23315740 |
atcctgcacaatatgtgcataggtactatagcaaggtgtattatgaggattgctatgctcaggttatatcccctattaatggccagaataaatgacctaa |
23315839 |
T |
|
| Q |
401 |
aac |
403 |
Q |
| |
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||| |
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| T |
23315840 |
aac |
23315842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 240 - 407
Target Start/End: Original strand, 7853047 - 7853214
Alignment:
| Q |
240 |
tgggaattggttgggatcccttgtaggcatgatgttgcagctattgtgatgaagggtgatgatcctgcataatatgtgcataggtactatagcaaggtgt |
339 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
7853047 |
tgggaattggttgggatcccttgtaggcatgctgttgcaactattgtgatgaagggtgatgatcttgcacaatatgtgcatgagtactatagcaaggtgt |
7853146 |
T |
|
| Q |
340 |
attatgaagattgctatgctcaggttatatcccctattaatggccagaataaatggcctaaaactgat |
407 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7853147 |
attatgaggattgctatgctcaggttatatcccctattaatgggcagaataaatggcctaaaactgat |
7853214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 47055768 - 47055592
Alignment:
| Q |
3 |
atgtttgagtggattagaacttacttaatggggaggtttgctatgttgaaagaaaaagtagggaattatagaggtgatatcatgcctaaacctatgagaa |
102 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || ||||| | | | || || ||| | || |||||||| ||| ||||||||||||| || | |
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| T |
47055768 |
atgtttgagtggattaggacatacttaatgggtagatttgcaaagcttaaggagaaatctgaaaaatatagagggactataatgcctaaacctaagaaga |
47055669 |
T |
|
| Q |
103 |
gacttgatagggaaatagaaatgagtggtaattggtttgctacttgggctggtgggttgaagtttgaggttacacat |
179 |
Q |
| |
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||||||| |||| || |||| ||||| || |||||||||||||||| || |||||||| ||||| ||||||||| |
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| T |
47055668 |
gacttgactgggagattgaaaaaagtggaaactggtttgctacttgggtaggggggttgaaatttgaagttacacat |
47055592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 20828737 - 20828561
Alignment:
| Q |
3 |
atgtttgagtggattagaacttacttaatggggaggtttgctatgttgaaagaaaaagtagggaattatagaggtgatatcatgcctaaacctatgagaa |
102 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || ||||| | | | || || ||| | || |||||||| ||| ||||||||||||| || | |
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| T |
20828737 |
atgtttgagtggattaggacatacttaatgggtagatttgcaaagcttaaggagaaatctgaaaaatatagagggactataatgcctaaacctaagaaga |
20828638 |
T |
|
| Q |
103 |
gacttgatagggaaatagaaatgagtggtaattggtttgctacttgggctggtgggttgaagtttgaggttacacat |
179 |
Q |
| |
|
||||||| |||| || |||| ||||| || |||||||||||||||| || |||||||| ||||| ||||||||| |
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|
| T |
20828637 |
gacttgactgggagattgaaaaaagtggaaactggtttgctacttgggtaggggggttgaaatttgaagttacacat |
20828561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 44932763 - 44932939
Alignment:
| Q |
3 |
atgtttgagtggattagaacttacttaatggggaggtttgctatgttgaaagaaaaagtagggaattatagaggtgatatcatgcctaaacctatgagaa |
102 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || ||||| | | | || || ||| | || |||||||| ||| ||||||||||||| || | |
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|
| T |
44932763 |
atgtttgagtggattaggacatacttaatgggtagatttgcaaagcttaaggagaaatctgaaaaatatagagggactataatgcctaaacctaagaaga |
44932862 |
T |
|
| Q |
103 |
gacttgatagggaaatagaaatgagtggtaattggtttgctacttgggctggtgggttgaagtttgaggttacacat |
179 |
Q |
| |
|
||||||| |||| || |||| ||||| || |||||||||||||||| || |||||||| ||||| ||||||||| |
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|
| T |
44932863 |
gacttgactgggagattgaaaaaagtggaaactggtttgctacttgggtaggggggttgaaatttgaagttacacat |
44932939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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