View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5763_low_7 (Length: 362)
Name: NF5763_low_7
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 40 - 346
Target Start/End: Original strand, 28588934 - 28589240
Alignment:
| Q |
40 |
attgattttgactaaaaataaattatgtaaagcgttttatctttggatgcactcatataaaaatgagttgaacaataaattatagcattcaactaaattc |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28588934 |
attgattttgactaaaaataaattatgtaaagcgttttatctttggatgcactcatatgaaaatgagttgaacaataaattatagcattcaactaaattc |
28589033 |
T |
|
| Q |
140 |
agttgtactcctctaaaatcaatattacacctccaagtaaaattaaacatacacttattataaacaaattttcacattatatcttatctaatgtatgatt |
239 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28589034 |
aattgtactcctctaaaatcaatattacacctccaagtaaaactaaacatacacttattataaacaaattttcacattatatcttatctaatgtatgatt |
28589133 |
T |
|
| Q |
240 |
cttctcaagatcactaacaaaactgtctttgcttttctttttctttacaaaagtgattatggcaagatacttttatgttaaatattgacacttgaaaaca |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28589134 |
cttctcaagatcactaacaaaactgtctttgcttttctttttctttacaaaagtgattatggcaagatacttttatgttaaatattgacacttcaaaaca |
28589233 |
T |
|
| Q |
340 |
tccaaaa |
346 |
Q |
| |
|
||||||| |
|
|
| T |
28589234 |
tccaaaa |
28589240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 43628223 - 43628178
Alignment:
| Q |
75 |
tttatctttggatgcactcatataaaaatgagttgaacaataaatt |
120 |
Q |
| |
|
||||| |||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
43628223 |
tttatatttggatgcattcatataaatacgagttgaacaataaatt |
43628178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 17112000 - 17111905
Alignment:
| Q |
27 |
tgattttgaataaattgattttgactaaaaataaat--tatgtaaagcgttttatctttggatgcactcatataaaaatgagttgaacaataaatt |
120 |
Q |
| |
|
||||||||| | |||||||||||||||||| | ||| || |||||| | ||| | |||||||||| |||| ||||||||||| ||| ||||||| |
|
|
| T |
17112000 |
tgattttgagtgaattgattttgactaaaattgaattgtaggtaaagtgatttgtgtttggatgcattcatgtaaaaatgagtagaattataaatt |
17111905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 43521048 - 43521020
Alignment:
| Q |
92 |
tcatataaaaatgagttgaacaataaatt |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43521048 |
tcatataaaaatgagttgaacaataaatt |
43521020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University