View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5763_low_9 (Length: 339)
Name: NF5763_low_9
Description: NF5763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5763_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 49525137 - 49524821
Alignment:
| Q |
1 |
atcaacagttgaatggtggattttgcatcccataaaagatatatgagtgttgtaaatgtcttgtctaattattaagcctgatatcagatttttataaata |
100 |
Q |
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| T |
49525137 |
atcaacagttgaatggtggattttgcatcccataaaagatatatgagtgttgtaaatgtct-----aattattaagcctgatatcagatttttataaata |
49525043 |
T |
|
| Q |
101 |
gtaaattttattaattcagttattgcttgaacagttttaagtttataaactaattgatattcattgcagaaattgaatgaagaacgaaacaagtgaaagt |
200 |
Q |
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| T |
49525042 |
gtaaattttattaattcagttattgcttgaacagttttaagtttataaactaattgatattcattgcagaaattgaatgaagaacgaaacaagtgaaagt |
49524943 |
T |
|
| Q |
201 |
aacctgaggagaagggtggtagcgccagagggaaagtttccaatcggagttgtggacggagacatagtggagttcgtcggcggtgcatatggaaggctta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49524942 |
aacctgaggagaagggtggtagcgccagagggaaagtttccaatcggagttgtggacggagacatagtggagttcgtcggcggtgcatatcgaaggctta |
49524843 |
T |
|
| Q |
301 |
tcgcggacggcggtggagaagg |
322 |
Q |
| |
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||||| |||||||||||||||| |
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| T |
49524842 |
tcgcgaacggcggtggagaagg |
49524821 |
T |
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