View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5764-Insertion-4 (Length: 90)

Name: NF5764-Insertion-4
Description: NF5764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5764-Insertion-4
NF5764-Insertion-4
[»] chr5 (9 HSPs)
chr5 (8-90)||(39912653-39912735)
chr5 (8-87)||(37467708-37467787)
chr5 (8-90)||(38967243-38967325)
chr5 (12-90)||(39899733-39899811)
chr5 (8-86)||(39849378-39849456)
chr5 (8-90)||(39858770-39858852)
chr5 (8-90)||(39866390-39866472)
chr5 (23-90)||(39734704-39734771)
chr5 (22-90)||(39869112-39869180)
[»] chr3 (1 HSPs)
chr3 (8-78)||(36057906-36057976)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 9e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 39912653 - 39912735
Alignment:
Q  8 tgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtc 90  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39912653 tgcttttgaacacagaaactcctcactttcccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtc 39912735  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 37467708 - 37467787
Alignment:
Q  8 tgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaag 87  Q
    |||||||| ||| ||||||||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  37467708 tgcttttgtacacggaaactccgcactttgtcatgttctacaagatcaaaatatatatcctttccaatctgttctccaag 37467787  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 38967325 - 38967243
Alignment:
Q  8 tgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtc 90  Q
    ||||| |||||| ||||||| ||||| ||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  38967325 tgcttctgaacacggaaactgctcacattgtcatggtctacaagatcaaaatacatatcctttcctatctgttctgcaaggtc 38967243  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-21
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 39899733 - 39899811
Alignment:
Q  12 tttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtc 90  Q
    ||||||||  |||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  39899733 tttgaacatagaaaatccccactttgtcatggtctacaagatcaaaatatatatcctttccaatctgttttgcaaggtc 39899811  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 39849378 - 39849456
Alignment:
Q  8 tgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaa 86  Q
    |||||||||||| ||||||||||||||||  || |||||||||||| |||||||| ||| |||||||| ||||||||||    
T  39849378 tgcttttgaacacggaaactcctcactttatcaaggtctacaagatcaaaatataaatcatttccaatttgttctgcaa 39849456  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 39858770 - 39858852
Alignment:
Q  8 tgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtc 90  Q
    ||||||| |||| ||||||||||||||||| || ||||||| |||| ||||||||| || |||||||| ||||||||||||||    
T  39858770 tgctttttaacacggaaactcctcactttgtcaaggtctacgagatcaaaatatatgtcatttccaatttgttctgcaaggtc 39858852  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 39866390 - 39866472
Alignment:
Q  8 tgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtc 90  Q
    |||||||||||| ||||| ||||||||||| ||| |||||| |||| ||||||||||| |||||||| ||||| |||||||||    
T  39866390 tgcttttgaacatggaaaatcctcactttgtcatagtctacgagatcaaaatatatatactttccaacctgttttgcaaggtc 39866472  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 39734771 - 39734704
Alignment:
Q  23 aaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtc 90  Q
    ||||| ||||||||| || |||| ||||||| |||||||||||||||||||||||||| |||||||||    
T  39734771 aaactgctcactttgtcagggtcaacaagatcaaaatatatatcctttccaatctgttgtgcaaggtc 39734704  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 39869112 - 39869180
Alignment:
Q  22 gaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctgttctgcaaggtc 90  Q
    |||||||| |||||| ||| ||||||| |||| |||| ||||||||||||||||||||||||| |||||    
T  39869112 gaaactccccacttttccaaggtctacgagatcaaaacatatatcctttccaatctgttctgccaggtc 39869180  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 36057976 - 36057906
Alignment:
Q  8 tgcttttgaacaaggaaactcctcactttgccatggtctacaagattaaaatatatatcctttccaatctg 78  Q
    |||||||| ||| ||||||| ||||||||| | ||||||||||||| ||| || ||||||||||| |||||    
T  36057976 tgcttttgtacacggaaacttctcactttgtcgtggtctacaagatcaaagtagatatcctttcccatctg 36057906  T

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