View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5764_high_1 (Length: 495)
Name: NF5764_high_1
Description: NF5764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5764_high_1 |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: scaffold0290 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 476
Target Start/End: Original strand, 6133 - 6603
Alignment:
| Q |
12 |
atgaataaaagaaaagggttgggacatgaatggtgtaggttgagcaatagggcatgcctttgccttttatggtattgtttggttttaatttggtcatgac |
111 |
Q |
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| T |
6133 |
atgaataaaagaaaagggttgggacatgaatggtgtaggttgagcaatagggcatgcctttgccttttatagtattgtttggttttaatttggtcatgac |
6232 |
T |
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| Q |
112 |
ttcttgatgtaaactcctgaaagcgtggaattaattacgtacatgctcacattgannnnnnnnnattat------tgggtaacccttggaggttgggcta |
205 |
Q |
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| T |
6233 |
ttcttgatgtaaactcctgaaagcgtggaattaattacgtacatgctcacattgattttttatttttatttttattgggtaacccttggaggttgggcta |
6332 |
T |
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| Q |
206 |
aaaattaaataaaatatggttaggaattattttatctatacgaatcgaattcaatctttataaacaattcttctttactaaattatttgagtcaaattat |
305 |
Q |
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| T |
6333 |
aaaattaaataaaatatggttaggaattattttatctatacgaatcgaattcaatcttcataaacaattcatctttactaaattatttgagtcaaattat |
6432 |
T |
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| Q |
306 |
ttggttaaatgtctaaataggatactttcttacctttcgtatctttacaattcgaattaaatatcaaaatattattacctatatcatccccactacaaaa |
405 |
Q |
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| T |
6433 |
ttggttaaatgtctaaataggatactttcttacctttcgtatctttacaactcgaattaaatatgaaaatattattacctatatcatccccactacaaaa |
6532 |
T |
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| Q |
406 |
caataaatgcaaatatgattttgtaaatattatacaaagtggaaccttatttgtattttgaatggtattct |
476 |
Q |
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| T |
6533 |
caataaatgcaaatatgattttgtaaatgttatacaaagtggaaccttatttgtattttgaatggtattct |
6603 |
T |
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