View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5764_low_2 (Length: 397)

Name: NF5764_low_2
Description: NF5764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5764_low_2
NF5764_low_2
[»] chr5 (12 HSPs)
chr5 (197-388)||(39911893-39912087)
chr5 (78-200)||(39912188-39912310)
chr5 (78-200)||(38967894-38968016)
chr5 (1-82)||(39912348-39912429)
chr5 (78-200)||(39865608-39865732)
chr5 (81-200)||(37467036-37467156)
chr5 (98-200)||(39848531-39848633)
chr5 (195-292)||(38971855-38971951)
chr5 (3-81)||(39899295-39899378)
chr5 (110-200)||(39735112-39735199)
chr5 (197-268)||(39858115-39858185)
chr5 (318-375)||(39898888-39898944)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 197 - 388
Target Start/End: Complemental strand, 39912087 - 39911893
Alignment:
Q  197 ttttcaatattattttgctcatattacccccttcaagcttcttattctgtgaccttttcatttctgattgtttgcttttaggaaaatgttagtttttaaa 296  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39912087 ttttgaatattattttgctcatat-acccccttcaagcttcttattctgtgaccttttcatttctgattgtttgcttttaggaaaatgttagtttttaaa 39911989  T
Q  297 at----nnnnnnnnnnncttagagcttcttttcccccacatttctgttttatgttgaatctattcatgacattttatatcaacctgctagtataat 388  Q
    ||               ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  39911988 ataaaaaataaaaaaaacttggagcttcttttcccccacatttctgttttatgttgaatctattcatgacattttatatcaaactgctaatataat 39911893  T

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Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 39912310 - 39912188
Alignment:
Q  78 tgatgattattcaacaggtgtgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcat 177  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39912310 tgatgattattcaacagatgtgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcat 39912211  T
Q  178 accggctcgattccagcgctttt 200  Q
    |||||||||||||||||||||||    
T  39912210 accggctcgattccagcgctttt 39912188  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 38967894 - 38968016
Alignment:
Q  78 tgatgattattcaacaggtgtgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcat 177  Q
    ||||||||||||||| |  |||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||| |||||||| |||||    
T  38967894 tgatgattattcaaccgaggtgttatttttgtaagtttgatttctctgtttgattgttaatatgtgttatgtaggaagaggttgctaaagagtttggcat 38967993  T
Q  178 accggctcgattccagcgctttt 200  Q
    ||| |||| ||||||||||||||    
T  38967994 accagctcaattccagcgctttt 38968016  T

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Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 39912429 - 39912348
Alignment:
Q  1 taaaatattaaaacatgatgctttagttggaaggagaaaaaagtcgtcatttgaataatctgtggtttttatgcttttgatg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39912429 taaaatattaaaacatgatgctttagttggaaggagaaaaaagtcgtcatatgaataatctgtggtttttatgcttttgatg 39912348  T

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Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 39865732 - 39865608
Alignment:
Q  78 tgatgattattcaacaggtgtgttatttttgtaagtttgatttttctgtctgattgctaatat--gtgatatgtaggaagaggttgccaaagagttcggc 175  Q
    |||||||| |||||| | ||| ||||||||||| ||||||||||||||| | |||||||||||  |||||||||||||||||||||| ||||||||  ||    
T  39865732 tgatgatttttcaacggatgtattatttttgtatgtttgatttttctgttttattgctaatatatgtgatatgtaggaagaggttgctaaagagttttgc 39865633  T
Q  176 ataccggctcgattccagcgctttt 200  Q
    ||||| |||| ||||||||||||||    
T  39865632 ataccagctcaattccagcgctttt 39865608  T

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Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 37467156 - 37467036
Alignment:
Q  81 tgattattcaacaggtgtgttatttttgta-agtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcatac 179  Q
    ||||||||||| || ||||||||||||    |||||| | ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  37467156 tgattattcaatagctgtgttattttttccgagtttggtatttctgtttgattgctaatctgtgatatgtaggaagaggttgctaaagagttcggcatac 37467057  T
Q  180 cggctcgattccagcgctttt 200  Q
    | | || ||||||||||||||    
T  37467056 ctgttcaattccagcgctttt 37467036  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 39848633 - 39848531
Alignment:
Q  98 tgttatttttgtaagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcataccggctcgattccagcgct 197  Q
    ||||||||||||||||| |||||||  || |||||| |  ||||||||||||||||| | ||||| |||||||| |||||||| |||| |||||||||||    
T  39848633 tgttatttttgtaagttggatttttacgtttgattgattttatgtgatatgtaggaaaatgttgctaaagagtttggcataccagctcaattccagcgct 39848534  T
Q  198 ttt 200  Q
    |||    
T  39848533 ttt 39848531  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 38971855 - 38971951
Alignment:
Q  195 gcttttcaatattattttgctcatattacccccttcaagcttcttattctgtgaccttttcatttctgattgtttgcttttaggaaaatgttagtttt 292  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||| | |||| ||||  |||||| ||||| | ||||||| || ||||||||||    
T  38971855 gcttttcaatatgattttgctcatat-acccccttcaaacttcttattttatgacttttttgtttctggttgttgggttttaggcaagtgttagtttt 38971951  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 39899378 - 39899295
Alignment:
Q  3 aaatattaaaa-catgatgctttagttggaaggagaaaaaag----tcgtcatttgaataatctgtggtttttatgcttttgat 81  Q
    ||||||||||| |||||||||||||||| ||| ||||||||     ||||||| |||||||| |||||||||||||||||||||    
T  39899378 aaatattaaaagcatgatgctttagttgaaagaagaaaaaaagtattcgtcatatgaataatatgtggtttttatgcttttgat 39899295  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 39735112 - 39735199
Alignment:
Q  110 aagtttgatttttctgtctgattgctaatatgtgatatgtaggaagaggttgccaaagagttcggcataccggctcgattccagcgctttt 200  Q
    |||||||||||| |||| |||||| ||||  ||||||||||| ||  | |||| |||||||| | |||||||||| |||||||||||||||    
T  39735112 aagtttgatttt-ctgtttgattgttaat--gtgatatgtagaaattgcttgctaaagagtttgacataccggctggattccagcgctttt 39735199  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 39858185 - 39858115
Alignment:
Q  197 ttttcaatattattttgctcatattacccccttcaagcttcttattctgtgaccttttcatttctgattgtt 268  Q
    ||||||||||| |||||||||||| | |||||||||||||| |||| | |||| ||||||| |||| |||||    
T  39858185 ttttcaatattgttttgctcatat-atccccttcaagcttcatattttatgactttttcatctctggttgtt 39858115  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 39898944 - 39898888
Alignment:
Q  318 ttcttttcccccacatttctgttttatgttgaatctattcatgacattttatatcaac 375  Q
    ||||||| |||| ||||| |||||||||||| |||| ||||||| |||||||||||||    
T  39898944 ttctttttcccctcatttatgttttatgttg-atctgttcatgaaattttatatcaac 39898888  T

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