View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5764_low_3 (Length: 238)
Name: NF5764_low_3
Description: NF5764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5764_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 39912658 - 39912437
Alignment:
| Q |
16 |
aaagcagacatcatttaacgttttcaaggtatcatcatcaattacacttttacaacaggaaaattagagaaaacggaatcttgttaattgatgattgaag |
115 |
Q |
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| T |
39912658 |
aaagcagacatcatttaacgttttcaaggtatcatcatcaattacactattacaacgggaaaattagagaaaacggaatcttgttaattgatgattgaag |
39912559 |
T |
|
| Q |
116 |
tacaagcactactgtgattatattgactaagcctaataaatcataatcaagaaaaacaagaatcagatctttcctaataattgtcaccaatggaacctga |
215 |
Q |
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||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
39912558 |
tacaagcactaatgtgattatattgactaagctgaataactcgtaatcaagaaaaacaagaatcagatctttcctaataattggcaccaatcgaacctga |
39912459 |
T |
|
| Q |
216 |
gaccatcagaggagcactctcc |
237 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
39912458 |
gaccattagaggagcactctcc |
39912437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 39899731 - 39899555
Alignment:
| Q |
19 |
gcagacatcatttaacgttttcaaggtatcatcatcaattacacttttacaacaggaaaattagagaaaacggaatcttgttaattgatgattgaagtac |
118 |
Q |
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||||| ||||||||||| ||| ||||||||||||||||||||||| | || || | ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39899731 |
gcagaaatcatttaacgatttaaaggtatcatcatcaattacactatgactaccg-aaaattagagaaaacggaatcttgttaattgataattgaagtac |
39899633 |
T |
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| Q |
119 |
aagcactactgtgattatattgactaagcctaataaatcataatcaagaaaaacaagaatcagatctttcctaataat |
196 |
Q |
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| T |
39899632 |
aagcactaatgtgattatattgactaagcctaataaatcataatcaagaaaaacaagaaccagatctgtcataataat |
39899555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 38967321 - 38967496
Alignment:
| Q |
17 |
aagcagacatcatttaacgttttcaaggtatcatcatcaattacacttttacaacaggaaaattagagaaaacggaatcttgttaattgatgattgaagt |
116 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
38967321 |
aagcagacatc-tttcacgttttcaaggtatcatcatcaattacactatg-caaatggaaaattaaagaaaacggaatcttgttaattgaggattgaagt |
38967418 |
T |
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| Q |
117 |
acaagcactactgtgattatattgactaagcctaataaatcataatcaagaaaaacaagaatcagatctttcctaata |
194 |
Q |
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| T |
38967419 |
acaagcactaatgtgattatattgactaagcctactaaatcataatcaagaaaaaccagaatcagatatgtcctaata |
38967496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 39866395 - 39866256
Alignment:
| Q |
16 |
aaagcagacatcatttaacgttttcaaggtatcatcatcaattacacttttacaacaggaaaattagagaaaa-cggaatcttgttaattgatgattgaa |
114 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||||| ||||| | |||| | ||||| |||| ||| | ||||||| | |||||| |||||| |
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| T |
39866395 |
aaagcagatgtcatttaacattttcaaggtatcatcatcagttacagtcttacgtt-gtaaaataagaggaaatctgaatcttatcaattgaggattgat |
39866297 |
T |
|
| Q |
115 |
gtacaagcactactgtgattatattgactaagcctaataaa |
155 |
Q |
| |
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|||||||||||| ||||||||||| || ||||||||||||| |
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| T |
39866296 |
gtacaagcactaatgtgattatatagaataagcctaataaa |
39866256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 39858775 - 39858663
Alignment:
| Q |
16 |
aaagcagacatcatttaacgttttcaaggtatc--atcatcaattacacttttacaacaggaaaattaga-gaaaacggaatcttgttaattgatgattg |
112 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||| | ||||||||||| ||||| | |||||||||||||| ||||| |
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| T |
39858775 |
aaagcagacgtcatttaacgttttcaaggtatcatatcatcagttacactcttac-attggaaaattagacaaaaaccgtatcttgttaattgaggattg |
39858677 |
T |
|
| Q |
113 |
aagtacaagcacta |
126 |
Q |
| |
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|| |||||| |||| |
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| T |
39858676 |
aaatacaagtacta |
39858663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 37467713 - 37467676
Alignment:
| Q |
16 |
aaagcagacatcatttaacgttttcaaggtatcatcat |
53 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
37467713 |
aaagcagacaccatttaacgttttcaaggtatcatcat |
37467676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 39727643 - 39727680
Alignment:
| Q |
16 |
aaagcagacatcatttaacgttttcaaggtatcatcat |
53 |
Q |
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| T |
39727643 |
aaagcagacgtcatttaatgttttcaaggtatcatcat |
39727680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 29624477 - 29624528
Alignment:
| Q |
122 |
cactactgtgattatattgactaagcctaataaatcataatcaagaaaaaca |
173 |
Q |
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||||| ||||||||||| | |||||||||||||||| ||||||||||||||| |
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| T |
29624477 |
cactaatgtgattatataggctaagcctaataaatcttaatcaagaaaaaca |
29624528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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