View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5765-Insertion-1 (Length: 800)
Name: NF5765-Insertion-1
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5765-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 694; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 8 - 794
Target Start/End: Complemental strand, 43195310 - 43194522
Alignment:
| Q |
8 |
atctctccattcgatccggtgagaggactaatatcacccatctttatcatagcagtggcgaaatctgaggaaaaagaacttggattagtactgtagccac |
107 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43195310 |
atctctccatttgatccggtgagaggactaatatcacccatctttatcatagcagtggcgaaatctgaggaaaaagaacttggattagtactgtagccac |
43195211 |
T |
|
| Q |
108 |
tcactatggagttggtggatccgccattaaaaagttgttggtctgaatgtagaagacccttgttttgaacaaggttcttgaagtagttgttgtcaaaaga |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43195210 |
tcactatggagttggtggatccgccgttaaaaagttgttggtctgaatgaagaagacccttgttttgaacaaggttcttgaagtagttgttgtcaaatga |
43195111 |
T |
|
| Q |
208 |
agtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgcatttgggcaatttgattgtcttgtactagcaaatgaagtatctatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43195110 |
agtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgtatttgggcaatttgattgtcttgtactagcaaatgaagtatctatg |
43195011 |
T |
|
| Q |
308 |
ttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattgtgtgagcacctagtcaattaattaacacaccaaattaattatttg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
43195010 |
ttggtctcattgtagattcgtgccctaaaggttgtgcaccttgcttgtccaattgtgtgagcacctaatcaattaattaagacaccaaattaattatttg |
43194911 |
T |
|
| Q |
408 |
aaaattatgtgctcttcccaattgtgaaattatatatttgaattaaatataagt--nnnnnnnncataggcttatcgtccaaatcaatgcaattgcacct |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43194910 |
aaaattatgtgctcttcccaattgtgaaattatatatttgaactaaatataagtaaaaaaaaaacataggcttatcgtccaaatcaatgcaattgcacct |
43194811 |
T |
|
| Q |
506 |
gacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctgggatcgcggtgttagcag |
605 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
43194810 |
gacaatgtgaccaagtccttgctggaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgccgggattgcggtgttagcag |
43194711 |
T |
|
| Q |
606 |
cagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagctatcatgtaaattaaaagaaacacgacaattgaaa |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
43194710 |
cagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagctatcatgtaaattaaaagaaacacgacagttgaaa |
43194611 |
T |
|
| Q |
706 |
tattgattaattttcacttaatttacttttgcatgattatacttgcaattgaagtattaattagattttgattatttgagtaattaatt |
794 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
43194610 |
tattgattaattttcacttaatttacttttgcatgattacacttgcaattgaagtattaattagattttgattgtttgagtaattaatt |
43194522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 7 - 441
Target Start/End: Complemental strand, 43190281 - 43189847
Alignment:
| Q |
7 |
aatctctccattcgatccggtgagaggactaatatcacccatctttatcatagcagtggcgaaatctgaggaaaaagaacttggattagtactgtagcca |
106 |
Q |
| |
|
|||||||||||| ||||| ||||| || ||||||| |||||||| |||||||||||||| ||||| ||| ||||||| || ||||| || |||||| |
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|
| T |
43190281 |
aatctctccatttgatccagtgagtggcttaatatctcccatcttgatcatagcagtggcaaaatcagagaaaaaagagttttgattattaaaatagcca |
43190182 |
T |
|
| Q |
107 |
ctcactatggagttggtggatccgccattaaaaagttgttggtctgaatgtagaagacccttgttttgaacaaggttcttgaagtagttgttgtcaaaag |
206 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||||||||| |
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|
| T |
43190181 |
ctcactattgagttagtggacccgccgttgaaaagttgttggtctgaatgaagaagacccttgttttgaacaaggttcctgtagtagcagttgtcaaaag |
43190082 |
T |
|
| Q |
207 |
aagtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgcatttgggcaatttgattgtcttgtactagcaaatgaagtatctat |
306 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||| ||||| |||||||| ||||||||||| |
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|
| T |
43190081 |
aagtgggagtatggagatcaagaggtgccaaattgttgtcccctgatcctgatgtctttgggcaattagattgccttgtgctagcaaaagaagtatctat |
43189982 |
T |
|
| Q |
307 |
gttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattgtgtgagcacctagtcaattaattaacacaccaaattaattattt |
406 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
43189981 |
gttggtctcattgtagattcgtaccctaaatgttgtgcaccttgcttgtccaattgtgtgagcacctagtcaattaattaagacaccaaattagttattt |
43189882 |
T |
|
| Q |
407 |
gaaaattatgtgctcttcccaattgtgaaattata |
441 |
Q |
| |
|
|| |||||| | |||||||| ||| ||||||||| |
|
|
| T |
43189881 |
gacaattattagttcttcccagttgagaaattata |
43189847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 404
Target Start/End: Complemental strand, 43180956 - 43180559
Alignment:
| Q |
7 |
aatctctccattcgatccggtgagaggactaatatcacccatctttatcatagcagtggcgaaatctgaggaaaaagaacttggattagtactgtagcca |
106 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||||| |||||||||| ||| ||||| ||||||||||| ||||| ||||||| || ||| |
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| T |
43180956 |
aatctctccatttgatccggtgagaggtttaatatttcccatcttgatcatagcagcggcaaaatcagaggaaaaagagcttgggctagtactataacca |
43180857 |
T |
|
| Q |
107 |
ctcactatggagttggtggatccgccattaaaaagttgttggtctgaatgtagaagacccttgttttgaacaaggttcttgaagtagttgttgtcaaaag |
206 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
43180856 |
ctcactattgagttggtggacccgccgttaaaaagttgttggtctgaatggagaagacccttgttctgaacaaggttcttgaagtagttgttgtcaaaag |
43180757 |
T |
|
| Q |
207 |
aagtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgcatttgggcaatttgattgtcttgtactagcaaatgaagtatctat |
306 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| || || |||||||||| || || ||| |
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|
| T |
43180756 |
aactaggagtctgaagatcaagaggtgccaaattgttgtcacctgatcctgatgcctttgggcaatttgattgcctcgtgctagcaaatgcagcatttat |
43180657 |
T |
|
| Q |
307 |
gttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattgtgtgagcacctagtcaattaattaacacaccaaattaattat |
404 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| || |||||||||||||||||||| |||||| |||||||||||| || ||||||||||||| |
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|
| T |
43180656 |
gttggtctcgttgtagattcgtgccctaaaatttgtacaccttgcttgtccaattgtgtgtgcacctgttcaattaattaagactccaaattaattat |
43180559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 502 - 672
Target Start/End: Complemental strand, 43180467 - 43180297
Alignment:
| Q |
502 |
acctgacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctgggatcgcggtgtta |
601 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||| |
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|
| T |
43180467 |
acctgacaatgtgaccaaatctttgctagaaagaccaacggcgctaaacattgaggtgagtgtattgaggttggaagttggtgccgggatggcagtgtta |
43180368 |
T |
|
| Q |
602 |
gcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagcta |
672 |
Q |
| |
|
||||| |||||||||||||| || || |||||||||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
43180367 |
gcagcggattgactagccgttttagcatctcttcttccaagttttacattccaggttggacctccaagcta |
43180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 490 - 688
Target Start/End: Complemental strand, 43189331 - 43189133
Alignment:
| Q |
490 |
caatgcaattgcacctgacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctggg |
589 |
Q |
| |
|
||||| ||||| ||||||||||| ||| ||||||||| | |||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
43189331 |
caatggaattgtacctgacaatgcgactaagtccttggtggaaagaccaacattcttaaacattgaggtgagtatattaaggttggaagttggtcttggg |
43189232 |
T |
|
| Q |
590 |
atcgcggtgttagcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagctatcatgtaaattaaaag |
688 |
Q |
| |
|
|| || ||||| ||| ||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43189231 |
atggcagtgttcgcatcagattgactagcagttgtggcatctcttcttccaagttttacattccaggttgggccaccaagctatcatgtaaattaaaag |
43189133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 36191365 - 36190996
Alignment:
| Q |
8 |
atctctccattcgatccggtgagaggactaatatcacccatctttatcatagcagtggcgaaatctgaggaaaaagaacttggattagtactgtagccac |
107 |
Q |
| |
|
||||||||||| || |||||||| |||||||| || |||||||| ||||| || ||| ||||||| ||||||||||| ||||||| || || | |
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|
| T |
36191365 |
atctctccatttgaaccggtgaggggactaatgtctcccatcttgatcatggcggtgacgaaatcagaggaaaaagagcttggatacaagctatattcgt |
36191266 |
T |
|
| Q |
108 |
tcactatggagttggtggatccgccattaaaaagttgttggtctgaatgtagaagacccttgttttgaacaaggttcttgaagtagttgttgtcaaaaga |
207 |
Q |
| |
|
||||||||| | ||||||||| |||||||| ||||||||||| || || || || ||||| | | ||| |||||||||||||| | ||||||||| || |
|
|
| T |
36191265 |
gcactatggaatcggtggatccaccattaaagagttgttggtcggagtggagtagtcccttactgtcaactaggttcttgaagtaatggttgtcaaagga |
36191166 |
T |
|
| Q |
208 |
agtgggagtctgaagatcaagaggtgccaaattgttgtcccctgacccagatgcatttgggcaatttgattgtcttgtactagcaaatgaagtatctatg |
307 |
Q |
| |
|
|| || || ||||||||| ||||||||||| |||||||| || || |||| || ||||| |||||| ||||| | |||||| |||||||||||| |
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|
| T |
36191165 |
tgttggtgttgcaagatcaaggggtgccaaattattgtccccggaacccgatgtcttggggcaccctgattgccttgtgcgagcaaaggaagtatctatg |
36191066 |
T |
|
| Q |
308 |
ttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattgtgtgagcacctagtc |
377 |
Q |
| |
|
|||| || ||||| || | || ||||| || ||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
36191065 |
ttggagtcgttgtaaatgtgggctctaaatgtagtgcaccttgcttgtccaattgtgtgaccccctagtc |
36190996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 671
Target Start/End: Complemental strand, 36190800 - 36190635
Alignment:
| Q |
506 |
gacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctgggatcgcggtgttagcag |
605 |
Q |
| |
|
||||||| |||||| |||||| | |||||||||| |||| ||||| ||||| ||||| || ||| ||||||| ||||||||||| | |||| |||| |
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|
| T |
36190800 |
gacaatgcgaccaaatccttggtggaaagaccaagagcattaaaccttgagatgagttggttgaggcttgaagtgggtgctgggatgtcattgtttgcag |
36190701 |
T |
|
| Q |
606 |
cagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagct |
671 |
Q |
| |
|
| |||| |||||| || | || ||||||||||||||||| || | ||| |||||||| ||||||| |
|
|
| T |
36190700 |
ctgatttactagctgttcttgcatctcttcttccaagtttcacatcccatgttgggcctccaagct |
36190635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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