View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5765-Insertion-2 (Length: 724)

Name: NF5765-Insertion-2
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5765-Insertion-2
NF5765-Insertion-2
[»] chr2 (3 HSPs)
chr2 (8-468)||(36161801-36162269)
chr2 (536-724)||(36162357-36162545)
chr2 (469-506)||(36162290-36162327)
[»] chr8 (13 HSPs)
chr8 (563-724)||(26034354-26034515)
chr8 (563-724)||(30078476-30078637)
chr8 (370-445)||(24525117-24525192)
chr8 (162-222)||(26033957-26034017)
chr8 (579-721)||(25895866-25896008)
chr8 (573-649)||(25923750-25923826)
chr8 (579-718)||(24525354-24525493)
chr8 (570-666)||(26038245-26038341)
chr8 (573-724)||(24489452-24489603)
chr8 (16-63)||(30077126-30077173)
chr8 (370-448)||(25896119-25896197)
chr8 (370-431)||(30078283-30078344)
chr8 (14-67)||(25923102-25923155)
[»] chr3 (2 HSPs)
chr3 (601-724)||(45793539-45793662)
chr3 (601-721)||(45794807-45794927)
[»] chr4 (1 HSPs)
chr4 (371-440)||(17772549-17772618)


Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 36161801 - 36162269
Alignment:
Q  8 attgtataaaactccctccttctttcttcatcaactgcacaaacctcgtttccctcaggttttccgg----at--atgctgctggttcaagattactcgg 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||  ||  |||||||||||||||||||||    
T  36161801 attgtataaaactccctccttctttcttcatcaactgcacaaacctcgtttccctcaggttttccggtgccatcgata-tgctggttcaagattactcgg 36161899  T
Q  102 ttcattttccatcactgaagaagctctctctctcggcgcagacattgtgtgcac-----agattcattacttttctttctctctggctgccccaacctcg 196  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  36161900 ttcattttccatcactgaagaagctctctctc--ggcgcagacattgtgtgcacgccacagattcattacttttctttctctctggctgccccaacctcg 36161997  T
Q  197 aaactttgcaggtttacttttactttgactctcaacacatatctttgaccaaacctctcgtcacaccctcctccagttccaacagctttaaatccgccga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36161998 aaactttgcaggtttacttttactttgactctcaacacatatctttgaccaaacctctcgtcacaccttcctccagttccaacagctttaaatccgccga 36162097  T
Q  297 tcacaatttcacttgcacttacgttgtttacttcttaaatgatggattattcaaactgggcatcattggctgctggaagcattttttgatgtcttttccc 396  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36162098 tcacaatttcacttgcacttactttgtttacttcttaaatgatggattattcaaactgggcatcattggctgctggaagcattttttgatgtcttttccc 36162197  T
Q  397 tgactgaaagtgaacttgtcgaccctattctcaacctcatccgagatgacaacagtgaatttcatagacaac 468  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  36162198 tgactgaaagtgaatttgtcgaccctattctcaacctcatcagagatgacaacagtgaatttcatacacaac 36162269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 536 - 724
Target Start/End: Original strand, 36162357 - 36162545
Alignment:
Q  536 tatgtgtagtttagcactaatatttgatgttaccgtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcat 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36162357 tatgtgtagtttagcactaatatttgatgttaccgtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcat 36162456  T
Q  636 ttgaagttaattcttccatgttttaactcaaatccgctggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagag 724  Q
    |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  36162457 ttgaagttaattcttctatgttttaactcaaatctgctgggccatgttcttgagcaatgccacatgcttcaagttctcataattcagag 36162545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Original strand, 36162290 - 36162327
Alignment:
Q  469 gtatatctactttcacgtcatttgacatcaaaggtgaa 506  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36162290 gtatatctactttcacgtcatttgacatcaaaggtgaa 36162327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 563 - 724
Target Start/End: Original strand, 26034354 - 26034515
Alignment:
Q  563 tgttaccgtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaac 662  Q
    ||||| ||| |||| ||||||  |||||||||| ||||||||| ||||||||||||||| | ||||||||||| ||||||| |||||||||||||| |||    
T  26034354 tgttatcgtctacaagcagtgttcaattcatgctcctgttctaaattatcctgaatttcacgatttacatcatctgaagttcattcttccatgtttcaac 26034453  T
Q  663 tcaaatccgctggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagag 724  Q
    |||||||  |||||||| || |||||| |||||| ||||||||| |||||||||||||||||    
T  26034454 tcaaatcttctggtccacgtgcttgagaaatgccgcatgcttcaagttctcataattcagag 26034515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 563 - 724
Target Start/End: Original strand, 30078476 - 30078637
Alignment:
Q  563 tgttaccgtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaac 662  Q
    ||||| ||| |||||||||| |||| ||||||||||||||||| ||||||| ||||||||| |||||  |||| | ||||| |||||||| || || |||    
T  30078476 tgttatcgtgtacatgcagttgccacttcatgcccctgttctaaattatccagaatttcgcaatttatttcatctaaagttcattcttccctgcttcaac 30078575  T
Q  663 tcaaatccgctggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagag 724  Q
    || ||||  |||||| | | ||||||  |||||||| ||||||  |||||||||||| ||||    
T  30078576 tcgaatcttctggtcgacgctcttgaaaaatgccacgtgcttcgagttctcataattaagag 30078637  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 370 - 445
Target Start/End: Original strand, 24525117 - 24525192
Alignment:
Q  370 tggaagcattttttgatgtcttttccctgactgaaagtgaacttgtcgaccctattctcaacctcatccgagatga 445  Q
    ||||||||||| ||||||||||||||||||  || |||||| ||||||||||||||||||||  ||||||||||||    
T  24525117 tggaagcatttcttgatgtcttttccctgagagagagtgaatttgtcgaccctattctcaactgcatccgagatga 24525192  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 26033957 - 26034017
Alignment:
Q  162 attacttttctttctctctggctgccccaacctcgaaactttgcaggtttacttttacttt 222  Q
    |||||||| ||||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  26033957 attactttcctttctctctggcagccccaagctggaaactttgcaggtttacttttacttt 26034017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 579 - 721
Target Start/End: Complemental strand, 25896008 - 25895866
Alignment:
Q  579 cagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtcc 678  Q
    |||| |||| |||||||| |||||||| | ||||| || |||||| |||||| |||| | ||||| |||||||| ||||| ||||| |||    |||||     
T  25896008 cagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtca 25895909  T
Q  679 atgttcttgagcaatgccacatgcttcaggttctcataattca 721  Q
    | || |||||| ||||||| |||||||| ||||||||||||||    
T  25895908 acgtgcttgagaaatgccagatgcttcaagttctcataattca 25895866  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 573 - 649
Target Start/End: Original strand, 25923750 - 25923826
Alignment:
Q  573 tacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattct 649  Q
    |||| ||||||| || ||||||||||||||||||||||||| ||||||||||| ||| ||||| | ||||| |||||    
T  25923750 tacaagcagtggacacttcatgcccctgttctagattatccagaatttcgccaattaaatcatataaagttcattct 25923826  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 579 - 718
Target Start/End: Original strand, 24525354 - 24525493
Alignment:
Q  579 cagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtcc 678  Q
    ||||||||| ||||| ||| ||||||| | ||||| || |||||| | ||| ||| | | ||||| |||||||| || |||||||||||||  ||| ||     
T  24525354 cagtggccacttcattcccatgttctaaactatccagagtttcgcaaattagatcgtctaaagttcattcttccctgctttaactcaaatcttctgctca 24525453  T
Q  679 atgttcttgagcaatgccacatgcttcaggttctcataat 718  Q
    | || |||||| ||||||| |||||| | |||||||||||    
T  24525454 acgtgcttgagaaatgccatatgcttaaagttctcataat 24525493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 666
Target Start/End: Original strand, 26038245 - 26038341
Alignment:
Q  570 gtatacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaa 666  Q
    |||||||||||||||||| |||| | ||||||| |  ||||||| |||||||||  |||| | ||| | ||||| | |||||| |||||||||||||    
T  26038245 gtatacatgcagtggccacttcaagtccctgttattaattatccagaatttcgctctttagaacatctaaagttcactcttccctgttttaactcaa 26038341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 724
Target Start/End: Original strand, 24489452 - 24489603
Alignment:
Q  573 tacatgcagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgc 672  Q
    |||| |||||||||  |||||||||||||| || || || |  |||| ||| ||||||||||| | ||||| ||||| || |  || ||||||||||  |    
T  24489452 tacaagcagtggccgcttcatgcccctgttataaataattcaaaattccgcaatttacatcatctaaagttcattctccctttcttcaactcaaatcttc 24489551  T
Q  673 tggtccatgttcttgagcaatgccacatgcttcaggttctcataattcagag 724  Q
    || || | || ||| || |||||||  ||||||| |||||||||||||||||    
T  24489552 tgctcaaagtgcttcagaaatgccatctgcttcaagttctcataattcagag 24489603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 30077126 - 30077173
Alignment:
Q  16 aaactccctccttctttcttcatcaactgcacaaacctcgtttccctc 63  Q
    ||||||||||||||  |||||||||||||||  |||||||||||||||    
T  30077126 aaactccctccttccctcttcatcaactgcaacaacctcgtttccctc 30077173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 370 - 448
Target Start/End: Complemental strand, 25896197 - 25896119
Alignment:
Q  370 tggaagcattttttgatgtcttttccctgactgaaagtgaacttgtcgaccctattctcaacctcatccgagatgacaa 448  Q
    ||||||||||| |||| ||||||||||    |||||| ||| ||||||||||||||||||| | | |||||||| ||||    
T  25896197 tggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgaccctattctcaaacacctccgagatcacaa 25896119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 30078283 - 30078344
Alignment:
Q  370 tggaagcattttttgatgtcttttccctgac-tgaaagtgaacttgtcgaccctattctcaac 431  Q
    ||||||||||| | |||||||||||| | || |||||||||| ||||||||||||||||||||    
T  30078283 tggaagcatttctcgatgtcttttcc-tcacgtgaaagtgaatttgtcgaccctattctcaac 30078344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 25923102 - 25923155
Alignment:
Q  14 taaaactccctccttctttcttcatcaactgcacaaacctcgtttccctcaggt 67  Q
    |||||||| |||||||||| ||||| |||||||  |||||||||||||| ||||    
T  25923102 taaaactctctccttctttattcatgaactgcagcaacctcgtttccctaaggt 25923155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 601 - 724
Target Start/End: Original strand, 45793539 - 45793662
Alignment:
Q  601 ttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtccatgttcttgagcaatgccacat 700  Q
    ||||| |||||||| ||| || | ||||||||||| | ||||| ||| |||||||||||||||||||||   ||||||||||  ||||| |||| |||||    
T  45793539 ttctaaattatccttaatatcacaatttacatcatctaaagttcatttttccatgttttaactcaaatcttttggtccatgtgattgagaaatgacacat 45793638  T
Q  701 gcttcaggttctcataattcagag 724  Q
    | ||||||||||||||||||||||    
T  45793639 gattcaggttctcataattcagag 45793662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 721
Target Start/End: Original strand, 45794807 - 45794927
Alignment:
Q  601 ttctagattatcctgaatttcgccatttacatcatttgaagttaattcttccatgttttaactcaaatccgctggtccatgttcttgagcaatgccacat 700  Q
    ||||| |||||||| ||| || | ||||| ||||| | ||||| ||| ||| ||||||||||||||||    |||||||||| |||||| |||| |||||    
T  45794807 ttctaaattatccttaatatcacaatttatatcatctaaagttcatttttcaatgttttaactcaaatattttggtccatgtgcttgagaaatgacacat 45794906  T
Q  701 gcttcaggttctcataattca 721  Q
    | ||||  |||||||||||||    
T  45794907 gattcaaattctcataattca 45794927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 17772549 - 17772618
Alignment:
Q  371 ggaagcattttttgatgtcttttccctgactgaaagtgaacttgtcgaccctattctcaacctcatccga 440  Q
    |||||||| | |||||||||||||||||  |||||||||| ||||||||||||| |||| |||| |||||    
T  17772549 ggaagcatatcttgatgtcttttccctgcgtgaaagtgaatttgtcgaccctatgctcagcctcctccga 17772618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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