View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5765-Insertion-3 (Length: 567)
Name: NF5765-Insertion-3
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5765-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 98 - 562
Target Start/End: Complemental strand, 33966193 - 33965730
Alignment:
| Q |
98 |
ttagacgacgagaattggcttccttgataatctgaatagagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctacaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33966193 |
ttagacgacgagaattggcttccttgataatctgaatagagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctacaa |
33966094 |
T |
|
| Q |
198 |
agatagatacatacttaaaagtgaagattggtgaataaaaaatgataattaaagcaatagaaatagtaaaagaaatgacctcttcagtgctgttatcaag |
297 |
Q |
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| T |
33966093 |
agatagatacatgcttaaaagtgaagattgatgaataaaaaatgataattaaagcaatagaaatagtaaaagaaatgacctcttcagtgctgttatcaag |
33965994 |
T |
|
| Q |
298 |
aggatgtccagcaaaagaagtaagtaggtccttgagtgcaatttttaccaaaggaatacaaagtagctggtctttggattgagtgaaacaagaaaaaagg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
33965993 |
aggatgtccagcaaaagaagtaagtaggtccttgagtgcaatttttaccaaaggaatacaaagtagctggtctttggattgaatggaacaagaaaaaagg |
33965894 |
T |
|
| Q |
398 |
cggtcacaaaagcggtaaagccttaactcaggctgagggccaccgcatccgaatttaacataggctcgaatcggccaccaggaattgataaccaaacaaa |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33965893 |
cggtcacaaaagcggtaaagccttaactcaggctgagggccaccgcctccgaatttaacataggctcgaatcggcca-caggaattgataaccaaacaaa |
33965795 |
T |
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| Q |
498 |
tcccctccctgaatacttccattgactttccttggccttgcgccaccgctctagaaccaaccaaa |
562 |
Q |
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| T |
33965794 |
tcccctccctgaatacttccattgactttccttggccttgcaccaccgctctagaaccaaacaaa |
33965730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 33966428 - 33966342
Alignment:
| Q |
14 |
tggattatctcagcagagggggtttcctccttctgtgttagaaggcgagtttggctaagattagctttcttgattttctttttctta |
100 |
Q |
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| T |
33966428 |
tggataatctcaacagagggggtttcctccttctgtgttagaaggcgagtttggctaagattagctttcttgattttctttttctta |
33966342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 33433347 - 33433431
Alignment:
| Q |
114 |
ggcttccttgataatctgaatagagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctacaaa |
198 |
Q |
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| T |
33433347 |
ggcttccttgagaatctgaacagagctaaaatcatgttgtaagcattcttggtacatagagactagttgatcacacacctacaaa |
33433431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 33112070 - 33112009
Alignment:
| Q |
135 |
agagctaaaatcaccttctaagcattcttggtacatagccactagttgatcacaaacctaca |
196 |
Q |
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|||||||||||| |||| ||||||||||| |||||| ||| |||||| ||||||||||||| |
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| T |
33112070 |
agagctaaaatctccttgtaagcattcttcgtacattaccaatagttgttcacaaacctaca |
33112009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 528
Target Start/End: Complemental strand, 44945398 - 44945350
Alignment:
| Q |
480 |
aattgataaccaaacaaatcccctccctgaatacttccattgactttcc |
528 |
Q |
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|||| ||| ||||||||||||| || |||||||||||||||| |||||| |
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| T |
44945398 |
aatttatagccaaacaaatcccttctctgaatacttccattggctttcc |
44945350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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