View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5765-Insertion-4 (Length: 411)
Name: NF5765-Insertion-4
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5765-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 37809933 - 37810303
Alignment:
| Q |
8 |
attttgacaatgacacgtagacattgataactatttgagaaagtgaacgtgattgaatataaccacatgtgctactgttatacgagtatcgaacatcaag |
107 |
Q |
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| T |
37809933 |
attttgacaatgacatgtagacattgataactatttgagaaagtgaacgtgattgaatataaccacatgtgctactgttatacgagtatcgaacatcaag |
37810032 |
T |
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| Q |
108 |
gactaacacatgttgggcactgacgccttcaacccaaagtatcggtgttacataacctatagctactaatttggccacatgactagtactctaaacgctt |
207 |
Q |
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| T |
37810033 |
gactaacacac-ttgggcactgacgccttcaacccaaagtatcggtgttacataacctatagctactaatttggccatatgactagtactctaaacgctt |
37810131 |
T |
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| Q |
208 |
ctctttcaaggcatgagtcaatatatttggaataaagaagtagtgcatgtgacacaaaataatgcttgtactaagtcaaagtgttaatatacctgtgaga |
307 |
Q |
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| T |
37810132 |
ctctttcaaggcatgagtcaatatatttggaataaagaagtagtgcatgtgacacaaaataatgcttgtactaagtcaaagtgttaatatacctgtgaga |
37810231 |
T |
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| Q |
308 |
cgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaagg |
379 |
Q |
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| T |
37810232 |
cgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaagg |
37810303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 278 - 379
Target Start/End: Original strand, 37818159 - 37818260
Alignment:
| Q |
278 |
ctaagtcaaagtgttaatatacctgtgagacgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaa |
377 |
Q |
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| T |
37818159 |
ctaagtcaaagtgttaatatacctgtgagacgaacatgatgtataattccagaagtgtagttctgaagtccttcgaaaggatatagctgactatacacaa |
37818258 |
T |
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| Q |
378 |
gg |
379 |
Q |
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|| |
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| T |
37818259 |
gg |
37818260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 19905441 - 19905360
Alignment:
| Q |
298 |
acctgtgagacgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaagg |
379 |
Q |
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| T |
19905441 |
acctgtgagccgaacatgatggatgattccagaagtgtaattctgaagaccttcaaaaggataaagctggctgtacacaagg |
19905360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 34443090 - 34443052
Alignment:
| Q |
40 |
atttgagaaagtgaacgtgattgaatataaccacatgtg |
78 |
Q |
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| T |
34443090 |
atttgagaaagtgaaagtgattgaatgtaaccacatgtg |
34443052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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