View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5765-Insertion-6 (Length: 293)
Name: NF5765-Insertion-6
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5765-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 35542097 - 35542379
Alignment:
| Q |
8 |
gactatatatccgtcatcaaatttcccgtcaattgttccatgcactgaagaaccgagtgtttgtgctggactaattggactaactgcatataagaaagca |
107 |
Q |
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| T |
35542097 |
gactatatatccgtcatcaaatttcccgtcaattgttccatgcactgaagaaccgagtgtttgtgctggagtaattggactaactgcatataagaaagca |
35542196 |
T |
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| Q |
108 |
aatcttcaccagacataaacgaaaagtatatctactaaccaacatagataagaactttgtttgcataacaacttaattaagtgcttatagcataccaata |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35542197 |
aatcttcaccagacataaacgaaaagtatatctactaaccaacatagataagaactttgtttgcataacaacttaataaagtgcttatagcataccaata |
35542296 |
T |
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| Q |
208 |
cgttcagtgaatcctcccccaccggaaccaggagggcgtccttctcttttctgggaagaagtttctgcagaagtagttttagg |
290 |
Q |
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| T |
35542297 |
cgttcagtgaatcttcccccaccggaaccaggagggcgtccttttcttttctgggaagaagtttctgcagaagtagttttagg |
35542379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 35559435 - 35559720
Alignment:
| Q |
8 |
gactatatatccgtcatcaaatttcccgtcaattgttccatgcactgaagaaccgagtgtttgtgctggactaattggactaactgcatataagaaagca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35559435 |
gactatatatccgtcatcaaatttcccgtcaattgttccatgcactgaagaaccgagtgtttgtgctggagtaattggactaactgcatataagaaagca |
35559534 |
T |
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| Q |
108 |
aatcttcaccagacataaacgaaaagtatatctactaaccaacatagataagaactttgtttgcataacaacttaattaagtgcttatagcataccaata |
207 |
Q |
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| T |
35559535 |
aatcttcaccagacataaacgaaaagtatatctactaaccaacatagataagaactttgtttgcataacaacttaataaagcgcttatagcataccaata |
35559634 |
T |
|
| Q |
208 |
cgttcagtgaatcctcccccaccggaaccaggagggcgtccttctcttttctgggaagaagtttctgcagaagtagttttaggtcc |
293 |
Q |
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| T |
35559635 |
cgttcagtgaatcttcccccaccggaaccaggagggcgtccttttcttttctgggaagaagtttctgcagaagtagttttaggtcc |
35559720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 35918996 - 35918943
Alignment:
| Q |
222 |
tcccccaccggaaccaggagggcgtccttctcttttctgggaagaagtttctgc |
275 |
Q |
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| T |
35918996 |
tcccccaccggaaccaggagggtgcccttttcttttcttggaagaagtttctgc |
35918943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 35887626 - 35887572
Alignment:
| Q |
232 |
gaaccaggagggcgtccttctcttttctgggaagaagtttctgcagaagtagttt |
286 |
Q |
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| T |
35887626 |
gaaccagaagggcatccttttcttttcttggaagaagtttcttcagaagttgttt |
35887572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 2200849 - 2201042
Alignment:
| Q |
9 |
actatatatccgtcatcaaatttcccgtcaattgttccatgcactgaagaaccgagtgtttgtgctggactaattggactaactgcatataagaaagcaa |
108 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2200849 |
actatatatccgtcatcaaatttcatgtcaattgttccacgcactgaagaaccaagtgtctgtgctggactaattggactaactgcatataagaaagcaa |
2200948 |
T |
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| Q |
109 |
atcttcaccagacataaacgaaaagtatatctactaaccaacatagataagaactttgtttgcat-aacaacttaattaagtgcttatagcata |
201 |
Q |
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| T |
2200949 |
atctttaccacatataaatggaaattatatccacttaccaacatagattaggactctgttaggataaacaacttaactaagcgcttatagcata |
2201042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 23785134 - 23785171
Alignment:
| Q |
165 |
tgtttgcataa-caacttaattaagtgcttatagcata |
201 |
Q |
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| T |
23785134 |
tgtttgcataaacaacttaattaagtgcttatagcata |
23785171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 47003969 - 47004003
Alignment:
| Q |
165 |
tgtttgcataacaacttaattaagtgcttatagca |
199 |
Q |
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| T |
47003969 |
tgtttggataacaacttaattaagtgcttatagca |
47004003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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