View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5765-Insertion-8 (Length: 274)

Name: NF5765-Insertion-8
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5765-Insertion-8
NF5765-Insertion-8
[»] chr2 (4 HSPs)
chr2 (8-273)||(39115571-39115836)
chr2 (70-166)||(6724268-6724364)
chr2 (60-205)||(2206427-2206572)
chr2 (42-139)||(21580507-21580604)
[»] chr5 (7 HSPs)
chr5 (41-273)||(12833223-12833455)
chr5 (41-273)||(12865201-12865433)
chr5 (60-273)||(36257097-36257310)
chr5 (60-202)||(22561406-22561548)
chr5 (153-268)||(8250179-8250294)
chr5 (94-226)||(32019754-32019886)
chr5 (60-109)||(6050726-6050775)
[»] chr4 (9 HSPs)
chr4 (41-273)||(20508557-20508789)
chr4 (55-229)||(54872579-54872753)
chr4 (54-269)||(32808773-32808988)
chr4 (43-160)||(25132247-25132364)
chr4 (60-166)||(40689496-40689602)
chr4 (72-211)||(33100129-33100268)
chr4 (94-271)||(19161809-19161986)
chr4 (60-109)||(7661913-7661962)
chr4 (42-114)||(23280284-23280356)
[»] chr8 (2 HSPs)
chr8 (93-230)||(29216479-29216616)
chr8 (70-166)||(43774387-43774483)
[»] chr7 (5 HSPs)
chr7 (60-209)||(12089643-12089792)
chr7 (97-214)||(13700826-13700943)
chr7 (94-214)||(13637158-13637278)
chr7 (105-256)||(38152339-38152490)
chr7 (70-138)||(10273656-10273724)
[»] chr6 (8 HSPs)
chr6 (41-273)||(32198524-32198756)
chr6 (75-268)||(34627968-34628161)
chr6 (202-273)||(27103600-27103670)
chr6 (202-273)||(27145414-27145484)
chr6 (75-268)||(34722702-34722895)
chr6 (70-224)||(19155042-19155196)
chr6 (177-230)||(5669116-5669169)
chr6 (117-268)||(34601425-34601576)
[»] chr1 (3 HSPs)
chr1 (43-224)||(25394077-25394256)
chr1 (60-256)||(25528286-25528482)
chr1 (60-115)||(32643351-32643406)
[»] chr3 (5 HSPs)
chr3 (55-229)||(6924127-6924301)
chr3 (70-230)||(6892380-6892540)
chr3 (60-114)||(30165928-30165982)
chr3 (70-131)||(8596822-8596883)
chr3 (70-166)||(8131402-8131498)
[»] scaffold0225 (1 HSPs)
scaffold0225 (178-226)||(4800-4848)
[»] scaffold0233 (1 HSPs)
scaffold0233 (204-244)||(10298-10338)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 39115571 - 39115836
Alignment:
Q  8 ggctaatggaatttttgatgaggctcaccggcacaagaaggaactaattctctttaaggtatattttgaaaaagcctatgactctattgattggggttat 107  Q
    |||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39115571 ggctaatgaaattgttgatgaggctcaccgacacaagaaggaactaattctctttaaggtagattttgaaaaagcctatgactctattgattggggttat 39115670  T
Q  108 ttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggt 207  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |    
T  39115671 ttagatgaagtgatgttgaaaatgggttttccaacactatggagaaaatggataaaagagtgcatcggaacggccacaacttcggtgttggttaatggat 39115770  T
Q  208 ctccaacaaatgagttctctttgaggcggggtttgagacagggagacccgctttcgccttttttgt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39115771 ctccaacaaatgagttctctttgaggcggggtttgagacagggagacccgctttcgccttttttgt 39115836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 6724268 - 6724364
Alignment:
Q  70 attttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaaga 166  Q
    ||||||| ||||| || || ||| |||||||||||||||||||||  ||||||   |||||||| ||||| ||| |||||||||||||||| |||||    
T  6724268 attttgagaaagcgtacgattctgttgattggggttatttagatgcggtgatggccaaaatgggttttccgacattatggagaaaatggattaaaga 6724364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 2206427 - 2206572
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatgga 159  Q
    ||||||||  ||||||| ||||| || || ||| |||||| ||||||| | ||||  ||||||   |||||||||||||| ||  ||||||| |||||||    
T  2206427 tttaaggtggattttgagaaagcgtacgattctgttgattagggttatcttgatgcggtgatggctaaaatggggtttccgacgttatggaggaaatgga 2206526  T
Q  160 taaaagagtgcatcagaacggccacagcttcggtgttggttaatgg 205  Q
    | ||||| || || | |||||| || ||||| || |||||||||||    
T  2206527 tcaaagaatgtattacaacggctacggcttccgttttggttaatgg 2206572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 21580604 - 21580507
Alignment:
Q  42 aagaaggaactaattctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttcc 139  Q
    |||||||| || ||||| ||||||||  |||| |||||||| ||||||||  ||||||||  |||||| || ||||| ||| |||| |||||||||||    
T  21580604 aagaaggagctgattctttttaaggttgatttcgaaaaagcttatgactcccttgattggaattatttggaggaagttatgatgaagatggggtttcc 21580507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 12833455 - 12833223
Alignment:
Q  41 caagaaggaactaattctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttcca 140  Q
    |||||| ||||| ||||| ||||||||  ||||||| |||||||| || ||||| || ||| |||| |||||||| || |||||||||||||| || ||     
T  12833455 caagaaagaactgattctttttaaggtggattttgagaaagcctacgattctatagactggtgttacttagatgaggtaatgttgaaaatgggtttcccg 12833356  T
Q  141 acactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttgaggcggggtt 240  Q
    || |||||| | |||||||| |||||||||||  |||||||||||||||| || ||||| || |||||||||||  | ||||| ||| || || ||||||    
T  12833355 actctatggcggaaatggatgaaagagtgcattggaacggccacagcttcagttttggtaaacgggtctccaactgaggagttttctctgcggaggggtt 12833256  T
Q  241 tgagacagggagacccgctttcgccttttttgt 273  Q
    |||| ||||| || || ||||||||||| ||||    
T  12833255 tgaggcagggtgatcctctttcgcctttcttgt 12833223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 12865433 - 12865201
Alignment:
Q  41 caagaaggaactaattctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttcca 140  Q
    |||||| ||||| ||||| ||||||||  ||||||| |||||||| || ||||| || ||| |||| |||||||| || |||||||||||||| || ||     
T  12865433 caagaaagaactgattctttttaaggtggattttgagaaagcctacgattctatagactggtgttacttagatgaggtaatgttgaaaatgggtttcccg 12865334  T
Q  141 acactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttgaggcggggtt 240  Q
    || |||||| | |||||||| |||||||||||  |||||||||||||||| || ||||| || |||||||||||  | ||||| ||| || || ||||||    
T  12865333 actctatggcggaaatggatgaaagagtgcattggaacggccacagcttcagttttggtaaacgggtctccaactgaggagttttctctgcggaggggtt 12865234  T
Q  241 tgagacagggagacccgctttcgccttttttgt 273  Q
    |||| ||||| || || ||||||||||| ||||    
T  12865233 tgaggcagggtgatcctctttcgcctttcttgt 12865201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 36257310 - 36257097
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatgga 159  Q
    ||||||||  ||||||| ||||| ||||| ||| |||||||||||||||||||||  ||||||   |||||||| ||||| ||| |||||||||||||||    
T  36257310 tttaaggtggattttgagaaagcgtatgattctgttgattggggttatttagatgcggtgatggctaaaatgggttttccgacattatggagaaaatgga 36257211  T
Q  160 taaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttgaggcggggtttgagacagggagacccgct 259  Q
    | ||||||||  | | |||||| |||||||| || |||||||||||   ||| ||| ||||||| |||||| |  | |||||| | ||||||||||| ||    
T  36257210 tcaaagagtgtgttacaacggctacagcttccgttttggttaatggtagtcccacagatgagttttctttgggtagaggtttgcgtcagggagaccccct 36257111  T
Q  260 ttcgccttttttgt 273  Q
    ||| ||||||||||    
T  36257110 ttccccttttttgt 36257097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 202
Target Start/End: Original strand, 22561406 - 22561548
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatgga 159  Q
    ||||||||  ||||||| ||||||||||| |||||||||||| |||||||||    |||||||||||||||||||||||| ||  ||||| | |||||||    
T  22561406 tttaaggtggattttgagaaagcctatgattctattgattggcgttatttagtgtcagtgatgttgaaaatggggtttccgactttatggcggaaatgga 22561505  T
Q  160 taaaagagtgcatcagaacggccacagcttcggtgttggttaa 202  Q
    | ||||| |||||  | |||||| |||||| ||| ||||||||    
T  22561506 ttaaagaatgcattgggacggcctcagctttggttttggttaa 22561548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 268
Target Start/End: Complemental strand, 8250294 - 8250179
Alignment:
Q  153 aaatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttgaggcggggtttgagacagggag 252  Q
    |||||||||||||| || ||  | ||| | ||||| ||||| ||||| |||||||| |||||| | |||||| |||||| | |||||||||| || ||||    
T  8250294 aaatggataaaagaatgtataggcacgacaacagcatcggttttggtcaatgggtccccaacagacgagttccctttgaagaggggtttgaggcaaggag 8250195  T
Q  253 acccgctttcgccttt 268  Q
    |||||||||| |||||    
T  8250194 acccgctttccccttt 8250179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 32019886 - 32019754
Alignment:
Q  94 ttgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggt 193  Q
    ||||||||  ||| ||||| ||||| ||| |||||||||| |||||||| || ||| |||| ||||| ||||| ||  |  | ||||| || ||||||||    
T  32019886 ttgattggaattacttagaagaagtcatggtgaaaatgggttttccaactctttggcgaaagtggattaaagattgtgttgggacggcaacggcttcggt 32019787  T
Q  194 gttggttaatgggtctccaacaaatgagttctc 226  Q
    ||| || || |||||||| ||| ||||||||||    
T  32019786 gttagtaaacgggtctcctacagatgagttctc 32019754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 6050775 - 6050726
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttattt 109  Q
    ||||||||  |||||||||| |||||||||||| | ||||||||||||||    
T  6050775 tttaaggtggattttgaaaaggcctatgactctgtcgattggggttattt 6050726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 273
Target Start/End: Original strand, 20508557 - 20508789
Alignment:
Q  41 caagaaggaactaattctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttcca 140  Q
    |||||| ||||| ||||| ||||||||  ||||||| |||||||| || ||||| || ||| |||| |||||||| || |||||||||||||| || ||     
T  20508557 caagaaagaactgattctttttaaggtggattttgagaaagcctacgattctatcgactggtgttacttagatgaggtaatgttgaaaatgggtttcccg 20508656  T
Q  141 acactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttgaggcggggtt 240  Q
    || ||||||   |||||||| |||||||||||  ||||||||||| |||| || ||||| || |||||||||||  | ||||| ||| || || ||||||    
T  20508657 actctatggcagaaatggatgaaagagtgcattggaacggccacaacttcagttttggtaaacgggtctccaactgaggagttttctctgcggaggggtt 20508756  T
Q  241 tgagacagggagacccgctttcgccttttttgt 273  Q
    |||| ||||| || || ||||||||||| ||||    
T  20508757 tgaggcagggtgatcctctttcgcctttcttgt 20508789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 55 - 229
Target Start/End: Complemental strand, 54872753 - 54872579
Alignment:
Q  55 ttctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaa 154  Q
    |||| ||||||||  ||||||| ||||| || ||||| |||||||||  || ||| || ||||||||| |||| |||||||| |||||||| ||| | ||    
T  54872753 ttctttttaaggttgattttgagaaagcttacgactccattgattggtcttttttggaggaagtgatggtgaagatggggttcccaacactttggcgtaa 54872654  T
Q  155 atggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctcttt 229  Q
    |||||| ||||||||  |  | || || ||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  54872653 atggattaaagagtgtgtggggaccgctacagcctcggtgttggtcaatggctctccaacaaatgagttctcttt 54872579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 269
Target Start/End: Complemental strand, 32808988 - 32808773
Alignment:
Q  54 attctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaa 153  Q
    ||||| ||||||||  |||| || ||||| ||  |||| ||||||||| | ||||| ||||| || |||||||||||||||||||| ||||| ||| | |    
T  32808988 attctttttaaggttgatttcgagaaagcatacaactcaattgattggagctatttggatgatgttatgttgaaaatggggtttccgacactttggcgta 32808889  T
Q  154 aatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttgaggcggggtttgagacagggaga 253  Q
    | ||||||||||| || ||  | || || ||| |||| || |||||||| |||||||| | | ||||||||||||||||  |||| ||||| ||||| ||    
T  32808888 agtggataaaagaatgtattgggacagcaacaacttcagtattggttaacgggtctcccatagatgagttctctttgagaaggggcttgaggcagggtga 32808789  T
Q  254 cccgctttcgcctttt 269  Q
     | ||| |||||||||    
T  32808788 tcggctatcgcctttt 32808773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 25132364 - 25132247
Alignment:
Q  43 agaaggaactaattctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaac 142  Q
    ||||||| || ||||| ||||||||  ||||||| ||||||||||| ||||| |||   | ||||||||||||||||||| |||||||||||||||||||    
T  25132364 agaaggagctgattctttttaaggtggattttgagaaagcctatgattctatcgatctcgattatttagatgaagtgatggtgaaaatggggtttccaac 25132265  T
Q  143 actatggagaaaatggat 160  Q
     || ||| | ||||||||    
T  25132264 tctttggcggaaatggat 25132247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 40689602 - 40689496
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatgga 159  Q
    ||||||||  ||||||| ||||| || || ||| |||||||||||||||||||||  ||||||   |||||||| ||||| ||| |||||||||||||||    
T  40689602 tttaaggtggattttgagaaagcgtacgattctgttgattggggttatttagatgcggtgatggctaaaatgggttttccgacattatggagaaaatgga 40689503  T
Q  160 taaaaga 166  Q
    | |||||    
T  40689502 ttaaaga 40689496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 33100129 - 33100268
Alignment:
Q  72 tttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgca 171  Q
    ||||| ||||| ||||| || ||||||||| |||| || ||  |||||||| |||||||| | ||||| || || ||| |||| ||||| || |||||      
T  33100129 tttgagaaagcttatgattccattgattggagttacttggagaaagtgatggtgaaaatgagttttccgactctttggcgaaagtggattaaggagtgtg 33100228  T
Q  172 tcagaacggccacagcttcggtgttggttaatgggtctcc 211  Q
    |  | ||||||||| |||| ||||||||||||||||||||    
T  33100229 tggggacggccacaacttcagtgttggttaatgggtctcc 33100268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 271
Target Start/End: Original strand, 19161809 - 19161986
Alignment:
Q  94 ttgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggt 193  Q
    |||||||||||||||||||||  ||||||   |||||||| ||||| ||  |||||||||||||||| ||||| ||  | | |||||| || ||||| ||    
T  19161809 ttgattggggttatttagatgcggtgatggctaaaatgggatttccgactttatggagaaaatggatcaaagaatgtgttacaacggctacggcttccgt 19161908  T
Q  194 gttggttaatgggtctccaacaaatgagttctctttgaggcggggtttgagacagggagacccgctttcgcctttttt 271  Q
     ||||| |||||   ||| ||  |||||||  ||||| |  | |||||| | ||||||||||| ||||| ||||||||    
T  19161909 tttggtgaatggtagtcccacggatgagtttcctttgggtagaggtttgcgtcagggagaccccctttctcctttttt 19161986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 7661913 - 7661962
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttattt 109  Q
    ||||||||  ||||||||||||| ||||| ||| ||||||||||||||||    
T  7661913 tttaaggtcgattttgaaaaagcgtatgattctgttgattggggttattt 7661962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 23280356 - 23280284
Alignment:
Q  42 aagaaggaactaattctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatg 114  Q
    |||||||| |||||  | ||||||||| ||||||| ||||||| ||| | | |||||||||||||||| ||||    
T  23280356 aagaaggatctaatgttgtttaaggtagattttgagaaagcctgtgattatgttgattggggttatttggatg 23280284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 29216479 - 29216616
Alignment:
Q  93 attgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatcagaacggccacagcttcgg 192  Q
    |||||||||||||| ||||| || | ||||||||||||||| ||||| |  || ||| | || ||||||||||| |||||  ||||||||||| ||||||    
T  29216479 attgattggggttacttagacgaggagatgttgaaaatgggatttccgagtctttggcggaagtggataaaagattgcattggaacggccacaacttcgg 29216578  T
Q  193 tgttggttaatgggtctccaacaaatgagttctctttg 230  Q
    | |||||| | |||||||||||  ||||||||||||||    
T  29216579 tcttggtttacgggtctccaactgatgagttctctttg 29216616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 43774387 - 43774483
Alignment:
Q  70 attttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaaga 166  Q
    ||||||| || || || ||||||||  |||||  |||||||||||| |||||||| |||||||||||||| ||||| ||| | ||||||||||||||    
T  43774387 attttgataaggcatacgactctatcaattggatttatttagatgaggtgatgtttaaaatggggtttccgacactgtggcgtaaatggataaaaga 43774483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 12089643 - 12089792
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatgga 159  Q
    ||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||  |||||||| ||||||||||| ||||| || ||| | |||||||    
T  12089643 tttaaggtagattttgagaaagcttatgactctatagattggggttatttagatgtggtgatgttaaaaatggggttcccaactctttggcggaaatgga 12089742  T
Q  160 taaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtct 209  Q
    | ||| | |||||  | ||  || || |||| || |||||||||||||||    
T  12089743 ttaaataatgcattgggacaacctcaacttcagttttggttaatgggtct 12089792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 13700943 - 13700826
Alignment:
Q  97 attggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggtgtt 196  Q
    ||||| |||||||||||| |||||||||||||||||||||| | ||  ||| | | |||||||| ||||| |||||    |||||| || ||||||| ||    
T  13700943 attggtgttatttagatgcagtgatgttgaaaatggggtttacgacgttatcgcggaaatggattaaagaatgcattgcgacggcctcaacttcggtttt 13700844  T
Q  197 ggttaatgggtctccaac 214  Q
    ||||||||| || |||||    
T  13700843 ggttaatggttccccaac 13700826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 13637278 - 13637158
Alignment:
Q  94 ttgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggt 193  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||| | |  ||| |  ||||||||| ||||| |||||  | ||| || || |||||||    
T  13637278 ttgattggtgttatttagatgcggtgatgttgaaaatgggatttctagcgttatcgcaaaaatggattaaagaatgcattgggacgacctcaacttcggt 13637179  T
Q  194 gttggttaatgggtctccaac 214  Q
     ||||||||||| ||||||||    
T  13637178 tttggttaatggttctccaac 13637158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 38152339 - 38152490
Alignment:
Q  105 tatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatg 204  Q
    ||||||||||| || |||  ||||||| | ||||  || || |||||||||||||||| |||||||||   |||  | || |||||||| ||||| ||      
T  38152339 tatttagatgaggttatggggaaaatgagctttctgactctttggagaaaatggataacagagtgcattgaaacatctactgcttcggtcttggtaaaca 38152438  T
Q  205 ggtctccaacaaatgagttctctttgaggcggggtttgagacagggagaccc 256  Q
    ||||||||||  ||||||| |||||| || |||| ||||||||||| |||||    
T  38152439 ggtctccaactgatgagttttctttggggagggggttgagacagggtgaccc 38152490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 10273656 - 10273724
Alignment:
Q  70 attttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttc 138  Q
    ||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||||   |||||||||||||    
T  10273656 attttgagaaagcttatgattctatagattggggctatttagatgatgtgatgcgtaaaatggggtttc 10273724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 32198756 - 32198524
Alignment:
Q  41 caagaaggaactaattctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttcca 140  Q
    |||||||||| | ||||| || |||||  ||||||||||||| ||||| |||||||| |  |||||||||||||| ||||||  ||| ||||| |||||     
T  32198756 caagaaggaattgattctgttcaaggttgattttgaaaaagcatatgattctattgagtttggttatttagatgatgtgatgaagaagatgggttttcct 32198657  T
Q  141 acactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttgaggcggggtt 240  Q
    || || ||| | |||||||| || ||||| || ||||| || || ||||| || ||||| ||||||||||| ||  |||||||  ||||| |  |||| |    
T  32198656 actctttggcgtaaatggattaacgagtgtattagaacagctactgcttccgtcttggtaaatgggtctcctactgatgagtttgctttgggaaggggat 32198557  T
Q  241 tgagacagggagacccgctttcgccttttttgt 273  Q
    |||| ||||| || || |||||||| |||||||    
T  32198556 tgaggcagggtgatcctctttcgccgtttttgt 32198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 268
Target Start/End: Complemental strand, 34628161 - 34627968
Alignment:
Q  75 gaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatca 174  Q
    ||||| || |||||||||||||| | ||||| |||| |  | |||||| ||||||||||||||||  | || ||||| |||||||||||||| |||||      
T  34628161 gaaaaggcatatgactctattgactagggttttttacaaaatgtgatgctgaaaatggggtttccggctctttggagcaaatggataaaagaatgcattg 34628062  T
Q  175 gaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttgaggcggggtttgagacagggagacccgctttcgccttt 268  Q
      ||||| || ||||| || ||||| ||||| ||||||||  |||| ||||||||| || |||| ||||| ||||| ||||| ||||| |||||    
T  34628061 agacggctaccgcttctgttttggtaaatggctctccaacggatgaattctctttgtggtggggattgaggcagggtgaccctctttctccttt 34627968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 27103600 - 27103670
Alignment:
Q  202 atgggtctccaacaaatgagttctctttgaggcggggtttgagacagggagacccgctttcgccttttttgt 273  Q
    |||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||| ||||||||||    
T  27103600 atgggtctccaacaaatgagttttctttgcggcggg-tttgagatagggagacccgctttcaccttttttgt 27103670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 27145414 - 27145484
Alignment:
Q  202 atgggtctccaacaaatgagttctctttgaggcggggtttgagacagggagacccgctttcgccttttttgt 273  Q
    |||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||| ||||||||||    
T  27145414 atgggtctccaacaaatgagttttctttgcggcggg-tttgagatagggagacccgctttcaccttttttgt 27145484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 268
Target Start/End: Complemental strand, 34722895 - 34722702
Alignment:
Q  75 gaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatca 174  Q
    ||||| || |||||||||||||| | ||||| |||| |  | |||||| |||||||||||||| |  | || ||||| |||||||||||||| |||||      
T  34722895 gaaaaggcatatgactctattgactagggttttttacaaaatgtgatgctgaaaatggggttttcggctctttggagcaaatggataaaagaatgcattg 34722796  T
Q  175 gaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttgaggcggggtttgagacagggagacccgctttcgccttt 268  Q
      ||||| || ||||| || ||||| ||||| ||||||||  |||| ||||||||| || |||| ||||| ||||| ||||| ||||| |||||    
T  34722795 agacggctaccgcttctgttttggtaaatggctctccaacggatgaattctctttgtggaggggattgaggcagggtgaccctctttctccttt 34722702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 19155196 - 19155042
Alignment:
Q  70 attttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtg 169  Q
    ||||||| ||||| ||||||||||| || ||||||||||||||||| ||||| |  || ||||| ||||||    | ||||| || | ||| ||||||||    
T  19155196 attttgagaaagcttatgactctatagactggggttatttagatgaggtgatatgcaagatgggttttccagttttgtggaggaagtagatcaaagagtg 19155097  T
Q  170 catcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttc 224  Q
    |||  | ||||||||| | ||||| |||||||||||||| || || |||||||||    
T  19155096 cataggcacggccacaacatcggttttggttaatgggtcccctacgaatgagttc 19155042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 5669169 - 5669116
Alignment:
Q  177 acggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttg 230  Q
    |||||||||||||| |||||||||||||||||||| ||| |||| |||||||||    
T  5669169 acggccacagcttcagtgttggttaatgggtctcctacagatgaattctctttg 5669116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 268
Target Start/End: Complemental strand, 34601576 - 34601425
Alignment:
Q  117 gtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaa 216  Q
    |||||| ||||||||||||||||  | || ||||| |||||||||||||| |||||    ||||| || ||||  || ||||| ||||| ||||||||      
T  34601576 gtgatgctgaaaatggggtttccggctctttggagcaaatggataaaagaatgcattgagacggctaccgcttatgttttggtaaatggctctccaacgg 34601477  T
Q  217 atgagttctctttgaggcggggtttgagacagggagacccgctttcgccttt 268  Q
    |||| ||||||||| || |||| ||||| || || ||||| ||||| |||||    
T  34601476 atgaattctctttgtggaggggattgaggcaaggtgaccctctttctccttt 34601425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 25394256 - 25394077
Alignment:
Q  43 agaaggaactaattctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaac 142  Q
    |||||||| | ||||| ||||||||  ||||||| |||| |||  ||||||||||||||||||| |||||| | |||||||  |||||||| ||||  ||    
T  25394256 agaaggaaatgattctgtttaaggtggattttgagaaagtctactactctattgattggggttacttagataaggtgatgtcaaaaatgggttttctgac 25394157  T
Q  143 actatggagaaaatggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttc 224  Q
     || ||| | || ||||||||  ||| |||  ||||| ||||| ||||||| ||||||||||||||||||||  ||||||||    
T  25394156 tctttggcggaagtggataaa--agtacattggaacgaccacaacttcggttttggttaatgggtctccaactgatgagttc 25394077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 256
Target Start/End: Original strand, 25528286 - 25528482
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatgga 159  Q
    ||||||||  || |||| |||| |||||| ||||| |||||||||||||||||||  ||||||||||||||||||||||| || || ||| | || ||||    
T  25528286 tttaaggtggatattgagaaagtctatgattctatagattggggttatttagatgcggtgatgttgaaaatggggtttccgactctttggcggaagtgga 25528385  T
Q  160 taaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttct-ctttgaggcggggtttgagacagggagaccc 256  Q
    | ||||| |||||  | ||| || || ||| ||| ||||||||||| ||||| ||  | ||||||| ||| |||| ||||||||||||| || |||||    
T  25528386 ttaaagaatgcattgggacgacctcaactttggttttggttaatggttctcctactgaggagttctacttggagg-ggggtttgagacaaggcgaccc 25528482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 32643406 - 32643351
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatga 115  Q
    ||||||||  ||||||||||||| ||||| ||  ||||||||||||||||||||||    
T  32643406 tttaaggttgattttgaaaaagcgtatgattcagttgattggggttatttagatga 32643351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 229
Target Start/End: Original strand, 6924127 - 6924301
Alignment:
Q  55 ttctctttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaa 154  Q
    |||| ||||||||  ||||||| ||||| || || || |||||||||  ||  || || ||||||||| |||| |||||||| ||||  || ||| | ||    
T  6924127 ttctttttaaggttgattttgagaaagcttacgattcaattgattggtctttcttggaggaagtgatggtgaagatggggttcccaattctttggcgtaa 6924226  T
Q  155 atggataaaagagtgcatcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctcttt 229  Q
    |||||| ||||||||  |  | || || || |||||||||||||||||||| |||| |||||||||||| |||||    
T  6924227 atggattaaagagtgtgtggggactgctactgcttcggtgttggttaatggctctctaacaaatgagttttcttt 6924301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 6892380 - 6892540
Alignment:
Q  70 attttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaagagtg 169  Q
    ||||||| ||||| ||||| || ||||||||| |||| || |||  ||||||| ||||||||   ||||| || || ||| | || ||||| || |||||    
T  6892380 attttgacaaagcatatgattccattgattggagttacttggatttagtgatggtgaaaatgaattttccgactctttggcgtaagtggattaaggagtg 6892479  T
Q  170 catcagaacggccacagcttcggtgttggttaatgggtctccaacaaatgagttctctttg 230  Q
      |  | |||||||||||||| |||||||||| ||||||||| ||| |||| |||||||||    
T  6892480 tgtggggacggccacagcttcagtgttggttagtgggtctcctacagatgaattctctttg 6892540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 30165928 - 30165982
Alignment:
Q  60 tttaaggtatattttgaaaaagcctatgactctattgattggggttatttagatg 114  Q
    ||||||||  ||||||||||||| ||||| |||||||||||||||||||| ||||    
T  30165928 tttaaggtcgattttgaaaaagcatatgattctattgattggggttatttggatg 30165982  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 8596883 - 8596822
Alignment:
Q  70 attttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatg 131  Q
    ||||||||||||| ||||| ||  |||||||| ||||||||||||| |||||| | ||||||    
T  8596883 attttgaaaaagcatatgattccgttgattggagttatttagatgaggtgatgattaaaatg 8596822  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 8131498 - 8131402
Alignment:
Q  70 attttgaaaaagcctatgactctattgattggggttatttagatgaagtgatgttgaaaatggggtttccaacactatggagaaaatggataaaaga 166  Q
    ||||||| ||||| ||||| ||| |||||| |||||||||||| |  ||||||   |||||| | ||||||||| | ||||| |||||||| |||||    
T  8131498 attttgagaaagcgtatgattctgttgattagggttatttagacgcggtgatggccaaaatgtgttttccaacattgtggaggaaatggattaaaga 8131402  T

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Target: scaffold0225 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 4800 - 4848
Alignment:
Q  178 cggccacagcttcggtgttggttaatgggtctccaacaaatgagttctc 226  Q
    ||||||||||||| ||||||||||||||||| || |||||||| |||||    
T  4800 cggccacagcttcagtgttggttaatgggtcccctacaaatgaattctc 4848  T

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Target: scaffold0233 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 10298 - 10338
Alignment:
Q  204 gggtctccaacaaatgagttctctttgaggcggggtttgag 244  Q
    ||||||||||| ||||||||||||||| || ||||||||||    
T  10298 gggtctccaacgaatgagttctctttggggtggggtttgag 10338  T

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