View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5765_high_10 (Length: 237)
Name: NF5765_high_10
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5765_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 47370565 - 47370777
Alignment:
| Q |
7 |
tgtcgaagaaaatattttcctaaaattgttgtgttggatatgtgtgaggattgtcctcacatatatggtggatgacttgatagcagaaacctgatagcaa |
106 |
Q |
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| T |
47370565 |
tgtccaagcaaatatttttctaaaattgttgtgttggatatgtg--aggattgtcctcacatatatggtggatgacttgatagcagaaatctgatagcag |
47370662 |
T |
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| Q |
107 |
gtgattcaatggattttagggagactatgatattttaaaaataatggttgagtcaaacacaacctcacaaattctgctcgtgagatgagaattacccctg |
206 |
Q |
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| T |
47370663 |
atgattcaatggatcttagagagactgtgatattttaaaaataatggttgagcctaacacaatcccacaaattctgcttgtgagatgagaattacccctg |
47370762 |
T |
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| Q |
207 |
cttataaacaaatgt |
221 |
Q |
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| T |
47370763 |
cttataaacaaatgt |
47370777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 35819050 - 35819165
Alignment:
| Q |
65 |
acatatatggtggatgacttgatagcagaaacctgatagcaagtgattcaatggattttagggagactatgat---attttaaaaataatggttgagtca |
161 |
Q |
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| T |
35819050 |
acataaatggtgggtgacccgatagcggaaacctgatagcaggtggcccaatggatcttagagagactctgatgccatcttaaaaatcgtggttgggcct |
35819149 |
T |
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| Q |
162 |
aacacaacctcacaaa |
177 |
Q |
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| T |
35819150 |
aacacaacctcacaaa |
35819165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 4464459 - 4464403
Alignment:
| Q |
64 |
cacatatatggtggatgacttgatagcagaaacctgatagcaagtgattcaatggat |
120 |
Q |
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| T |
4464459 |
cacatatatggtgggtgactcgataacggaaacctgatagcatgtgacccaatggat |
4464403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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