View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5765_high_2 (Length: 384)
Name: NF5765_high_2
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5765_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 366
Target Start/End: Original strand, 35154880 - 35155237
Alignment:
| Q |
9 |
gaagaatatttggttcaaatgattgaaaaaatcgacgtaaatggagatggatatgttgacattgacgaatttggtgagttataccaaacaataatggatg |
108 |
Q |
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| T |
35154880 |
gaagaagatttggttcaaatgattgaaaaaatcgacgtaaatggagatggatatgttgacattgacgaatttggtgagttataccaaacaataatggatg |
35154979 |
T |
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| Q |
109 |
aaaaagatgaggaggaggatatgaaagaggcattcaatgtgtttgatcaaaatggagatgggttcatatcgggggaggaattaagcgcggtgttatcttc |
208 |
Q |
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| T |
35154980 |
aaaaagatgaggaggaggatatgaaagaggcattcaatgtgtttgatcaaaatggagatgggttcatatcgggggaggaattaagcgcggtgttatcttc |
35155079 |
T |
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| Q |
209 |
tttgggcttaaagcatggaaaaactttagaagattgcaaaaatatgatcaagaaagttgatgtggatggtgatggaatggttaacttcaaagaatttaag |
308 |
Q |
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| T |
35155080 |
tttgggcttaaagcatggaaaaactttagaagattgcaaaaatatgatcaagaaagttgatgtggatggtgatggaatggttaacttcaaagaatttcag |
35155179 |
T |
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| Q |
309 |
caaatgatgaaggctggagcttttgctgctgattcattgagttgatgcatggtagagg |
366 |
Q |
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| T |
35155180 |
caaatgatgaaggctggagcttttgctgctgattcattgagttgatgcatggtagagg |
35155237 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 18520264 - 18520193
Alignment:
| Q |
22 |
ttcaaatgattgaaaaaatcgacgtaaatggagatggatatgttgacattgacgaatttggtgagttatacc |
93 |
Q |
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| T |
18520264 |
ttcaaatgattgaaaaaatcaacgtaaatggagacgaatatgttgacattgacgaatttagcgagttctacc |
18520193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 25393557 - 25393648
Alignment:
| Q |
72 |
gacgaatttggtgagttataccaaacaataatggatgaaaaagatgaggaggaggatatgaaagaggcattcaatgtgtttgatcaaaatgg |
163 |
Q |
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| T |
25393557 |
gacgagtttggtgagttatatcaatccatcatggacgaaaaagatgaagaggaagacatgagggaagctttcaatgtctttgatcaaaatgg |
25393648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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