View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5765_high_4 (Length: 344)
Name: NF5765_high_4
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5765_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 329
Target Start/End: Complemental strand, 43195635 - 43195305
Alignment:
| Q |
6 |
aggagcacagacaattaaacataactaagaagcaaatagaaaagcttaacccctttttataaattaaaatcacaaacgtacttgtagatcatgaaaccaa |
105 |
Q |
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| T |
43195635 |
aggaacacaaacaattaaacataactaagaagcaaatagaaaagcttaacccctttttataaattaaaatcacaaacgtacttgtagatcatgaaaccaa |
43195536 |
T |
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| Q |
106 |
tctcctttcttacaattttgtaaatgaaacnnnnnnnn----cacaataaaagtaagacagtacaca--tacacaaccctccaaagcacacaaaatcaaa |
199 |
Q |
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| T |
43195535 |
tctcctttcttacaattttgtaaatgaaacaaaaaaaaaaaacacaataaaagtaagacagtacacacttacacaaccctccaaagcacacaaaatcaaa |
43195436 |
T |
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| Q |
200 |
tagacaatgaaaacatgtttaacaa-cttattatgcgcacaacacacatgtatataacacaattttgttgtatgtgtataactaggaccgttgactctta |
298 |
Q |
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| T |
43195435 |
tagacaatgaaaacatgtttaacaaacttattatgcgcacaacacacatgtatataacacaattttgttgtatgtgtataactaggaccgttaactctta |
43195336 |
T |
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| Q |
299 |
gttaggttttctacaattcttcctgatctct |
329 |
Q |
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| T |
43195335 |
gttaggttttctacaattctttctgatctct |
43195305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 43181234 - 43181157
Alignment:
| Q |
56 |
ccctttttataaattaaaatcacaaacgtacttgtagatcatgaaaccaatctcctttcttacaattttgtaaatgaa |
133 |
Q |
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||||||||||||||||||||||||| | ||||||||| || |||| | ||| |||||||||||||||||||||| |
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| T |
43181234 |
ccctttttataaattaaaatcacaattgaccttgtagattatcaaactagcttccgttcttacaattttgtaaatgaa |
43181157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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