View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5765_high_7 (Length: 267)

Name: NF5765_high_7
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5765_high_7
NF5765_high_7
[»] chr2 (8 HSPs)
chr2 (96-257)||(39115392-39115553)
chr2 (115-179)||(10690211-10690275)
chr2 (130-257)||(28398870-28398997)
chr2 (102-179)||(19852220-19852297)
chr2 (139-251)||(9667332-9667444)
chr2 (115-179)||(13838533-13838597)
chr2 (22-83)||(21580636-21580697)
chr2 (22-142)||(24737814-24737934)
[»] chr4 (13 HSPs)
chr4 (20-257)||(20508291-20508528)
chr4 (123-233)||(8811931-8812041)
chr4 (112-257)||(54872888-54873033)
chr4 (22-257)||(33099863-33100098)
chr4 (148-257)||(25132525-25132634)
chr4 (115-257)||(13155823-13155965)
chr4 (127-176)||(19649385-19649434)
chr4 (109-218)||(47420476-47420585)
chr4 (104-176)||(8486620-8486692)
chr4 (109-192)||(1826926-1827009)
chr4 (127-236)||(20676726-20676835)
chr4 (103-179)||(12727969-12728045)
chr4 (91-175)||(29327222-29327306)
[»] chr1 (12 HSPs)
chr1 (115-257)||(25528001-25528143)
chr1 (127-236)||(32351653-32351762)
chr1 (121-257)||(25394332-25394468)
chr1 (139-251)||(20797350-20797462)
chr1 (115-221)||(9483713-9483819)
chr1 (127-236)||(5498704-5498813)
chr1 (163-236)||(36191140-36191213)
chr1 (110-218)||(6052276-6052384)
chr1 (139-251)||(39431988-39432100)
chr1 (20-79)||(44893321-44893380)
chr1 (127-176)||(25503394-25503443)
chr1 (104-152)||(26132933-26132981)
[»] chr5 (10 HSPs)
chr5 (20-257)||(12833484-12833721)
chr5 (20-257)||(12865462-12865699)
chr5 (127-257)||(36257465-36257595)
chr5 (109-218)||(42515392-42515501)
chr5 (127-218)||(33384565-33384656)
chr5 (167-257)||(22561121-22561211)
chr5 (127-257)||(25855759-25855889)
chr5 (135-192)||(17830370-17830427)
chr5 (20-85)||(22561293-22561358)
chr5 (20-77)||(31122920-31122977)
[»] chr3 (5 HSPs)
chr3 (20-230)||(37443285-37443495)
chr3 (115-257)||(6923847-6923989)
chr3 (109-218)||(2365950-2366059)
chr3 (127-212)||(8131663-8131748)
chr3 (118-218)||(12333447-12333547)
[»] chr7 (6 HSPs)
chr7 (127-236)||(13441748-13441857)
chr7 (109-218)||(17722307-17722416)
chr7 (130-257)||(8772537-8772664)
chr7 (127-176)||(45994266-45994315)
chr7 (109-218)||(4936487-4936596)
chr7 (196-236)||(40680627-40680667)
[»] scaffold0034 (1 HSPs)
scaffold0034 (109-218)||(104202-104311)
[»] chr8 (6 HSPs)
chr8 (127-176)||(4986466-4986515)
chr8 (109-218)||(7926058-7926167)
chr8 (115-236)||(43773030-43773151)
chr8 (144-236)||(43246876-43246968)
chr8 (127-257)||(20825990-20826120)
chr8 (127-236)||(16374444-16374553)
[»] chr6 (4 HSPs)
chr6 (115-257)||(19155349-19155491)
chr6 (127-236)||(15675522-15675631)
chr6 (22-83)||(33549497-33549558)
chr6 (118-218)||(17604693-17604793)
[»] scaffold0225 (1 HSPs)
scaffold0225 (151-236)||(4418-4503)
[»] scaffold0061 (1 HSPs)
scaffold0061 (114-179)||(60485-60550)
[»] scaffold0017 (1 HSPs)
scaffold0017 (114-179)||(138083-138148)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 96 - 257
Target Start/End: Complemental strand, 39115553 - 39115392
Alignment:
Q  96 aattgagcgcaatctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatct 195  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  39115553 aattgagcgcaatctgtttgtaagaaccttcgccaaaatcttatacaaactccccaccaacaaaatcggacgaaagtcattcaaccgttgaggacagtct 39115454  T
Q  196 accttagggataagagcgatgaaagtgctattgatacctttaaccaacctaccattcctatg 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39115453 accttagggataagagcgatgaaagtgctattgatacctttaaccaacctaccattcctatg 39115392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 10690211 - 10690275
Alignment:
Q  115 gcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaa 179  Q
    |||||||||||||||||||  ||||| | ||| |||||||||||||| |||||||||||||||||    
T  10690211 gcaagaaccttcgccaaaactttataaacactacccaccaacgaaatgggacgaaagtcattcaa 10690275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 257
Target Start/End: Complemental strand, 28398997 - 28398870
Alignment:
Q  130 aaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattga 229  Q
    ||||| ||||||| ||| |||||||| || ||||||||||| || || ||||  ||||||  ||| ||||| || |||||| ||||||||||   ||| |    
T  28398997 aaaattttatacatacttcccaccaaggatatcggacgaaaatcgtttaacctctgaggattatccaccttcggaataagaacgatgaaagtagcattaa 28398898  T
Q  230 tacctttaaccaacctaccattcctatg 257  Q
    |||||||| ||||| ||||||| |||||    
T  28398897 tacctttagccaacttaccatttctatg 28398870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 19852297 - 19852220
Alignment:
Q  102 gcgcaatctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaa 179  Q
    ||||||||| || |||||||||||||||||||  ||||| |  || ||||||||||| ||||| ||| ||||||||||    
T  19852297 gcgcaatctattagcaagaaccttcgccaaaactttataaatgcttcccaccaacgagatcggtcgatagtcattcaa 19852220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 9667444 - 9667332
Alignment:
Q  139 tacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattgatacctttaa 238  Q
    |||| |||||||||||| |||||||||||||| |||||||| || ||||||  ||| || || || || ||| | ||||||||  |||||||||| ||      
T  9667444 tacatactccccaccaaagaaatcggacgaaaatcattcaagcgctgaggattatccactttcggaatgagaacaatgaaagtagtattgataccctttg 9667345  T
Q  239 ccaacctaccatt 251  Q
    ||||| |||||||    
T  9667344 ccaacttaccatt 9667332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 13838597 - 13838533
Alignment:
Q  115 gcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaa 179  Q
    ||||| |||||||||||||| ||||| |  |||||||| || ||||| |||||||||||||||||    
T  13838597 gcaaggaccttcgccaaaattttataaaggctccccacgaaagaaatgggacgaaagtcattcaa 13838533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 21580636 - 21580697
Alignment:
Q  22 gccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccgaaat 83  Q
    |||||||| || ||||| ||||||||||  |||||||||||||| ||||| | |||||||||    
T  21580636 gccaccaaaatcccatcaagaatttgtcttcctctaataaaagctgactgtgtatccgaaat 21580697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 24737934 - 24737814
Alignment:
Q  22 gccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccgaaatgagacagccaataattgagcgcaatctgtttgcaagaa 121  Q
    |||||||| || ||||| ||||| || || ||| |||||||||| ||||||  ||| ||||  | | ||||||||| ||| || | ||| ||||||||||    
T  24737934 gccaccaaaatcccatcaagaatctgacgacctttaataaaagccgactgaacatcagaaaccacagagccaataactgaacgaagtctatttgcaagaa 24737835  T
Q  122 ccttcgccaaaatcttataca 142  Q
    |||| | |||||| |||||||    
T  24737834 cctttgacaaaattttataca 24737814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 20508528 - 20508291
Alignment:
Q  20 tagccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccgaaatgagacagccaataattgagcgcaatctgtttgcaag 119  Q
    |||||||||| || ||||| ||||| | ||| ||| |||| || ||||| ||||| | |||||| | | | ||||||| || |||||| ||||| |||||    
T  20508528 tagccaccaaaattccatcaagaatctatcgacctttaatgaaggcagattgagagttcgaaataacagaaccaataactgtgcgcaacctgttagcaag 20508429  T
Q  120 aaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaa 219  Q
     ||||||||||| |||||||||||||| ||||||| |||||||||||| || ||||||||||| ||||| |  || | |||||| |||||||| |||||     
T  20508428 caccttcgccaatatcttatacaaactacccaccagcgaaatcggacggaaatcattcaaccgctgagggctgtcaatcttaggaataagagcaatgaac 20508329  T
Q  220 gtgctattgatacctttaaccaacctaccattcctatg 257  Q
    |||||||| || |||||   |||||| |||||||||||    
T  20508328 gtgctatttatccctttggtcaaccttccattcctatg 20508291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 8812041 - 8811931
Alignment:
Q  123 cttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtg 222  Q
    |||||||||||| ||||||| ||| |||||||| ||||| ||||| ||||||||||| ||||| |||  ||| |||||||| ||||| || || ||||||    
T  8812041 cttcgccaaaattttatacatactacccaccaatgaaatgggacggaagtcattcaaacgttgtggattatcaaccttaggaataagggcaataaaagtg 8811942  T
Q  223 ctattgatacc 233  Q
    ||||| |||||    
T  8811941 ctattaatacc 8811931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 257
Target Start/End: Original strand, 54872888 - 54873033
Alignment:
Q  112 tttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagag 211  Q
    |||||||| |||||||||||||||||||||| ||| || ||||| ||||| || ||||| ||||| |  | |||||||  ||| |||||||| ||||| |    
T  54872888 tttgcaaggaccttcgccaaaatcttatacatactaccaaccaatgaaatgggccgaaaatcattaagactttgaggattatccaccttaggaataagtg 54872987  T
Q  212 cgatgaaagtgctattgatacctttaaccaacctaccattcctatg 257  Q
    | ||||| || ||||| || |||||| ||||| | ||||| |||||    
T  54872988 caatgaatgtactatttatccctttagccaacttcccatttctatg 54873033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 33100098 - 33099863
Alignment:
Q  22 gccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccgaaatgagacagccaataattgagcgcaatctgtttgcaagaa 121  Q
    |||||||| || ||||| ||||| || || ||| ||||||| || ||||||| ||| ||||| | | ||||||| |  || || |  || ||||||||||    
T  33100098 gccaccaaaatgccatcgagaatctgacgacctttaataaaggccgactgagcatcagaaataacagagccaattacagatcgaagcctatttgcaagaa 33099999  T
Q  122 ccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagt 221  Q
    |||| |||||||| ||||||| || ||| ||||| || || || ||||| |||||||| | |||||||| ||| | ||| || || ||||||||||||||    
T  33099998 ccttagccaaaattttatacagacacccaaccaaagatattggccgaaaatcattcaatctttgaggactatcaatcttcggaatgagagcgatgaaagt 33099899  T
Q  222 gctattgatacctttaaccaacctaccattcctatg 257  Q
     || || || |||||  | ||| | |||||||||||    
T  33099898 actgtttattcctttggctaactttccattcctatg 33099863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 25132525 - 25132634
Alignment:
Q  148 cccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattgatacctttaaccaacctac 247  Q
    |||||||| ||||| ||||||||||| || | ||||||  ||| ||| ||||||||||||||||| |||||| | ||||| || ||||||  ||| || |    
T  25132525 cccaccaaagaaatgggacgaaagtcgttaagccgttgcagactatcaaccttagggataagagcaatgaaaatactatttatccctttagtcaatctcc 25132624  T
Q  248 cattcctatg 257  Q
    ||||||||||    
T  25132625 cattcctatg 25132634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 257
Target Start/End: Complemental strand, 13155965 - 13155823
Alignment:
Q  115 gcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcga 214  Q
    ||||||||||||||||| || ||||||||||| |||||||| ||||| |  | ||| |||||||  || ||||||   || |||||||| |||||||| |    
T  13155965 gcaagaaccttcgccaatattttatacaaacttcccaccaatgaaatagtcctaaaatcattcaggcgctgaggattgtcaaccttaggaataagagcaa 13155866  T
Q  215 tgaaagtgctattgatacctttaaccaacctaccattcctatg 257  Q
     ||| || ||||| || |||||| ||||| | ||||| |||||    
T  13155865 cgaacgtactatttatccctttagccaactttccatttctatg 13155823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 19649385 - 19649434
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcatt 176  Q
    |||||||| || ||||||||||||||||| ||||| ||||||||||||||    
T  19649385 gccaaaattttgtacaaactccccaccaaggaaataggacgaaagtcatt 19649434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 47420476 - 47420585
Alignment:
Q  109 ctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataa 208  Q
    |||||||| ||||  ||||||||||| || ||||||||||||||||| ||||| || ||| | |||||||||  |||||| | | | || ||||| ||||    
T  47420476 ctgtttgctagaattttcgccaaaattttgtacaaactccccaccaaagaaatagggcgatactcattcaacgattgagggctagcaactttaggaataa 47420575  T
Q  209 gagcgatgaa 218  Q
    | ||||||||    
T  47420576 gggcgatgaa 47420585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 8486692 - 8486620
Alignment:
Q  104 gcaatctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcatt 176  Q
    ||||||| ||||| || | ||| |||||||||||||| | |||||||||||| ||||| |||||||| |||||    
T  8486692 gcaatctatttgctagcagcttagccaaaatcttataaagactccccaccaaagaaataggacgaaaatcatt 8486620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 1827009 - 1826926
Alignment:
Q  109 ctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaa 192  Q
    |||||||||||||  ||||||||||| |||||||  ||||||||||| ||||| ||  |||| ||||||||   ||||||||||    
T  1827009 ctgtttgcaagaattttcgccaaaattttatacatgctccccaccaaagaaatagggtgaaactcattcaaagattgaggacaa 1826926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 20676726 - 20676835
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctat 226  Q
    |||||||||||||| | ||| |||||||| ||||| |||||||  ||||| | |   ||||||| | |||| ||||| || ||||| ||||||||  |||    
T  20676726 gccaaaatcttataaagacttcccaccaaagaaataggacgaagatcattgagcttctgaggactagctactttaggaatgagagcaatgaaagtagtat 20676825  T
Q  227 tgataccttt 236  Q
    ||||||||||    
T  20676826 tgataccttt 20676835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 12727969 - 12728045
Alignment:
Q  103 cgcaatctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaa 179  Q
    |||||||| |||||||||||||| || | ||||||||| |  || || ||||| ||||| || ||||||||||||||    
T  12727969 cgcaatctatttgcaagaaccttagcaagaatcttataaaggcttccgaccaaggaaataggtcgaaagtcattcaa 12728045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 29327306 - 29327222
Alignment:
Q  91 ccaataattgagcgcaatctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcat 175  Q
    ||||| ||||| || |||||||| ||||| ||||| |||||||| ||||| |  ||||||||||| ||||  |||||||| ||||    
T  29327306 ccaatcattgaacgtaatctgttagcaagtacctttgccaaaattttataaatgctccccaccaaggaaaagggacgaaaatcat 29327222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 115 - 257
Target Start/End: Complemental strand, 25528143 - 25528001
Alignment:
Q  115 gcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcga 214  Q
    |||||||||||||||||||| ||||||| ||| || ||||| ||||| ||  |||||||||||||||||||||||| ||| ||||||||||||||||| |    
T  25528143 gcaagaaccttcgccaaaattttatacatacttccaaccaaagaaatagggagaaagtcattcaaccgttgaggactatcaaccttagggataagagcaa 25528044  T
Q  215 tgaaagtgctattgatacctttaaccaacctaccattcctatg 257  Q
    ||||||| ||||| || |||||   |||||| |||||||||||    
T  25528043 tgaaagtactattaatccctttggtcaaccttccattcctatg 25528001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 32351762 - 32351653
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctat 226  Q
    |||||||||||||||| |||||||||||||||||| |||||||| ||||| | |  |||||||| | |||| ||||| || ||||| ||||||||  |||    
T  32351762 gccaaaatcttatacagactccccaccaacgaaataggacgaaaatcattgagcttttgaggactagctactttaggaatgagagcaatgaaagtagtat 32351663  T
Q  227 tgataccttt 236  Q
    ||||||||||    
T  32351662 tgataccttt 32351653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 25394332 - 25394468
Alignment:
Q  121 accttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaag 220  Q
    ||||||||||| || |||||||  || |||| ||||||||||||| |||| |||||||| ||  |||| | ||| ||||||||||||||| | ||||| |    
T  25394332 accttcgccaagattttatacatgctacccaacaacgaaatcggatgaaattcattcaaacgacgagggctatcaaccttagggataagatcaatgaacg 25394431  T
Q  221 tgctattgatacctttaaccaacctaccattcctatg 257  Q
    ||||||| || |||||   |||||| |||||||||||    
T  25394432 tgctatttattcctttggtcaaccttccattcctatg 25394468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 20797350 - 20797462
Alignment:
Q  139 tacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattgatacctttaa 238  Q
    |||| |||||||||||| |||||||||||||| |||||||| || ||||||  ||| || || || |||||| | ||||||||  |||||||||||||      
T  20797350 tacatactccccaccaatgaaatcggacgaaaatcattcaaacgctgaggattatccactttcggaataagaacaatgaaagtagtattgataccttttg 20797449  T
Q  239 ccaacctaccatt 251  Q
    ||||| |||||||    
T  20797450 ccaacttaccatt 20797462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 9483819 - 9483713
Alignment:
Q  115 gcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcga 214  Q
    ||||| ||||| |||| || |||||||| | | | ||||||  |||| || |||||||||||||||| |||||| | ||||||| ||||||||||||| |    
T  9483819 gcaaggacctttgccagaaccttatacatatttcgcaccaaacaaatgggtcgaaagtcattcaaccattgagggctatctaccatagggataagagcaa 9483720  T
Q  215 tgaaagt 221  Q
    |||||||    
T  9483719 tgaaagt 9483713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 5498704 - 5498813
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctat 226  Q
    |||||||||||||| | |||||||||||| || || |||||||| ||||| | |   ||||||| |||||| ||||| || || || ||||||||  |||    
T  5498704 gccaaaatcttataaagactccccaccaaagagataggacgaaaatcattaagcttctgaggactatctactttaggaatgagggcaatgaaagtagtat 5498803  T
Q  227 tgataccttt 236  Q
    ||||||||||    
T  5498804 tgataccttt 5498813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 36191213 - 36191140
Alignment:
Q  163 ggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattgataccttt 236  Q
    |||||||| |||||||  |||||||||||||| |||||||| |||||||| ||||| | ||| || ||||||||    
T  36191213 ggacgaaaatcattcagacgttgaggacaatcaaccttaggaataagagcaatgaatgagctgtttataccttt 36191140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 6052276 - 6052384
Alignment:
Q  110 tgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataag 209  Q
    ||||||| ||||  ||||||||||| || ||||| ||||||||||| ||||| || ||||| |||||||||  |||||| | | | || ||||| |||||    
T  6052276 tgtttgctagaattttcgccaaaattttgtacaagctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataag 6052375  T
Q  210 agcgatgaa 218  Q
     ||||||||    
T  6052376 ggcgatgaa 6052384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 39431988 - 39432100
Alignment:
Q  139 tacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattgatacctttaa 238  Q
    |||| |||||||||||| |||||| ||||||| |||||||| || ||||||  ||| || || || || ||| | ||||||||  |||||||||||||      
T  39431988 tacatactccccaccaaagaaatcagacgaaaatcattcaaacgctgaggattatccactttcggaatgagaacaatgaaagtagtattgataccttttg 39432087  T
Q  239 ccaacctaccatt 251  Q
    ||||| |||||||    
T  39432088 ccaacttaccatt 39432100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 44893321 - 44893380
Alignment:
Q  20 tagccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccg 79  Q
    |||||||||  ||||||||||||||||| || ||| ||| ||||||||| ||||||||||    
T  44893321 tagccaccaggataccatctagaatttggcgacctttaacaaaagcagattgagaatccg 44893380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 25503443 - 25503394
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcatt 176  Q
    |||||||| || |||| |||||||||||| ||||| ||||||||||||||    
T  25503443 gccaaaattttgtacatactccccaccaaggaaataggacgaaagtcatt 25503394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 26132933 - 26132981
Alignment:
Q  104 gcaatctgtttgcaagaaccttcgccaaaatcttatacaaactccccac 152  Q
    ||||||| ||||| ||||  || ||||||||||||||||||||||||||    
T  26132933 gcaatctatttgcgagaaatttagccaaaatcttatacaaactccccac 26132981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 12833484 - 12833721
Alignment:
Q  20 tagccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccgaaatgagacagccaataattgagcgcaatctgtttgcaag 119  Q
    |||||||||| || | ||| ||||| ||||| ||| |||| || ||||| ||||| ||| |||| | | | ||||||| || |||||| ||||| |||||    
T  12833484 tagccaccaaaattcgatcaagaatctgtcgacctttaatgaaggcagattgagagtccaaaataacagaaccaataactgtgcgcaacctgttagcaag 12833583  T
Q  120 aaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaa 219  Q
     ||||||||||| |||||||||||||| ||||||| ||||||| | |  || |||| |||||| ||||| |  || |||||||| |||||||| |||||     
T  12833584 caccttcgccaatatcttatacaaactacccaccagcgaaatcagtctgaaatcatccaaccgctgagggctgtcaaccttaggaataagagcaatgaac 12833683  T
Q  220 gtgctattgatacctttaaccaacctaccattcctatg 257  Q
    |||||||| || |||||   |||||| |||||||||||    
T  12833684 gtgctatttatccctttggtcaaccttccattcctatg 12833721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 12865462 - 12865699
Alignment:
Q  20 tagccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccgaaatgagacagccaataattgagcgcaatctgtttgcaag 119  Q
    |||||||||| || | ||| ||||| ||||| ||| |||| || ||||| ||||| ||| |||| | | | ||||||| || |||||| ||||| |||||    
T  12865462 tagccaccaaaattcgatcaagaatctgtcgacctttaatgaaggcagattgagagtccaaaataacagaaccaataactgtgcgcaacctgttagcaag 12865561  T
Q  120 aaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaa 219  Q
     ||||||||||| ||||||||||||||  |||||| ||||||| | |  || |||| |||||| ||||| |  || |||||||| |||||||| |||||     
T  12865562 caccttcgccaatatcttatacaaactaaccaccagcgaaatcagtctgaaatcatccaaccgctgagggctgtcaaccttaggaataagagcaatgaac 12865661  T
Q  220 gtgctattgatacctttaaccaacctaccattcctatg 257  Q
    |||||||| || |||||   |||||| |||||||||||    
T  12865662 gtgctatttatccctttggtcaaccttccattcctatg 12865699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 36257465 - 36257595
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctat 226  Q
    |||| ||||||||||||||| || ||||| || || |||||||| ||| | ||   ||||||| ||||||||||||| |||||||| || |||||   ||    
T  36257465 gccagaatcttatacaaactaccaaccaatgatataggacgaaaatcacttaaagattgaggagaatctaccttaggaataagagctataaaagtagaat 36257564  T
Q  227 tgatacctttaaccaacctaccattcctatg 257  Q
    |||||||||| |  ||| |||||||||||||    
T  36257565 tgatacctttgattaacttaccattcctatg 36257595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 42515392 - 42515501
Alignment:
Q  109 ctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataa 208  Q
    |||||||| ||||  ||||||||||| || ||||| ||||||||||| ||||| || ||||| |||||||||  |||||| | | | || ||||| ||||    
T  42515392 ctgtttgctagaattttcgccaaaattttgtacaagctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataa 42515491  T
Q  209 gagcgatgaa 218  Q
    | ||||||||    
T  42515492 gggcgatgaa 42515501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 33384656 - 33384565
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaa 218  Q
    |||||||| ||||| | ||||||||||||||||||||| | ||| ||||||||   ||||||||  ||||| ||||| ||||| || |||||    
T  33384656 gccaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcaaggattgaggactctctactttaggaataagggcaatgaa 33384565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 22561211 - 22561121
Alignment:
Q  167 gaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattgatacctttaaccaacctaccattcctatg 257  Q
    |||||||| |||| ||||||||||  || |||||||| ||||| || | ||||||  | ||||| || ||| |||||||||||||||||||    
T  22561211 gaaagtcaatcaaacgttgaggactctcaaccttaggaataagtgcaaagaaagtattgttgatccccttagccaacctaccattcctatg 22561121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 25855889 - 25855759
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctat 226  Q
    |||||||| ||||| | ||||||||||||||||||||| | ||| |||||||    |||||| || ||||| ||||| ||||| || ||||| ||   ||    
T  25855889 gccaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagggcaatgaacgtagcat 25855790  T
Q  227 tgatacctttaaccaacctaccattcctatg 257  Q
    | ||||||||   |||||| |||||||||||    
T  25855789 ttatacctttcgacaacctcccattcctatg 25855759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 17830370 - 17830427
Alignment:
Q  135 cttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaa 192  Q
    |||||||||||| |||||||| ||||| |||||| | ||| |||||||||| ||||||    
T  17830370 cttatacaaacttcccaccaaagaaatgggacgataatcagtcaaccgttgcggacaa 17830427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 22561358 - 22561293
Alignment:
Q  20 tagccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccgaaatga 85  Q
    ||||||||||||| ||||| ||||| || || ||| |||| |||| ||||||||||||| ||||||    
T  22561358 tagccaccaatatgccatcaagaatctgacgacctttaatgaaagtagactgagaatccaaaatga 22561293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 31122977 - 31122920
Alignment:
Q  20 tagccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatc 77  Q
    ||||||||||||||||||| ||||| || |||||| |||| || ||||| ||||||||    
T  31122977 tagccaccaatataccatcaagaatctgacggcctttaatgaatgcagattgagaatc 31122920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 37443285 - 37443495
Alignment:
Q  20 tagccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccgaaatgagacagccaataattgagcgcaatctgtttgcaag 119  Q
    |||||||||  ||||||||||||||||| || ||| ||| ||||||||| ||||||||||| || |   | |||||||| || || | ||  || || ||    
T  37443285 tagccaccaggataccatctagaatttggcgacctttaacaaaagcagattgagaatccgagataaccaacccaataatagaacgaagtcgattagccag 37443384  T
Q  120 aaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaa 219  Q
     |||||||| | ||| ||||||| ||| |||||||| ||||| |||||||| ||||| | |||||| ||||  || |||||||| |||||||| ||||||    
T  37443385 gaccttcgcaagaattttatacatacttcccaccaaagaaattggacgaaaatcattaagccgttgcggactctcaaccttaggaataagagcaatgaaa 37443484  T
Q  220 gtgctattgat 230  Q
    || ||||||||    
T  37443485 gtactattgat 37443495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 257
Target Start/End: Complemental strand, 6923989 - 6923847
Alignment:
Q  115 gcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcga 214  Q
    ||||| |||||||||||||||||||||| ||| || ||||| ||||| || ||||| ||||| |  | |||||||   || |||||  | |||||||| |    
T  6923989 gcaaggaccttcgccaaaatcttatacatactgccaaccaaagaaatgggccgaaattcattaagactttgaggattttccacctttcgaataagagcaa 6923890  T
Q  215 tgaaagtgctattgatacctttaaccaacctaccattcctatg 257  Q
    |||| || ||||| || |||||| ||||| | |||||||||||    
T  6923889 tgaatgtactatttatccctttagccaacttcccattcctatg 6923847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 2365950 - 2366059
Alignment:
Q  109 ctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataa 208  Q
    |||||||| ||||  ||||||||||| || ||||| ||||||||||| ||||| || ||||| |||||||||  |||||| | | | || ||||| ||||    
T  2365950 ctgtttgctagaattttcgccaaaattttgtacaagctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagccactttaggaataa 2366049  T
Q  209 gagcgatgaa 218  Q
    | ||||||||    
T  2366050 gggcgatgaa 2366059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 8131663 - 8131748
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagc 212  Q
    |||||||| ||||||||||| || ||||| ||||| |||||||| ||||| ||   ||||||| ||||||||||||| || |||||    
T  8131663 gccaaaattttatacaaacttccgaccaaagaaataggacgaaaatcatttaaagattgaggagaatctaccttaggaatgagagc 8131748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 12333547 - 12333447
Alignment:
Q  118 agaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatga 217  Q
    |||| ||| |||| ||| ||||| | ||||||||||||||||||||| | ||| ||||||||   |||||| || ||||| ||||||||||| || ||||    
T  12333547 agaagctttgccataattttataaagactccccaccaacgaaatcggtctaaaatcattcaaggattgagggcactctactttagggataagggcaatga 12333448  T
Q  218 a 218  Q
    |    
T  12333447 a 12333447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 13441748 - 13441857
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctat 226  Q
    |||||||||||||||| ||||||||||||||| ||  ||||||| ||||| | |  |||||||| | |||| ||||| || ||||| ||||||||  |||    
T  13441748 gccaaaatcttatacagactccccaccaacgatatatgacgaaaatcattgagcttttgaggactagctactttaggaatgagagcaatgaaagtagtat 13441847  T
Q  227 tgataccttt 236  Q
    ||||||||||    
T  13441848 tgataccttt 13441857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 17722307 - 17722416
Alignment:
Q  109 ctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataa 208  Q
    |||||||| ||||  ||||| ||||| ||||||| |||||||||||| ||||| || ||||| |||||||||  |||||||| | |||| ||||| || |    
T  17722307 ctgtttgctagaattttcgctaaaattttatacagactccccaccaaagaaatagggcgaaactcattcaacgattgaggactagctactttaggaatta 17722406  T
Q  209 gagcgatgaa 218  Q
    | ||||||||    
T  17722407 gggcgatgaa 17722416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 257
Target Start/End: Original strand, 8772537 - 8772664
Alignment:
Q  130 aaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattga 229  Q
    ||||| ||||||| ||| |||||||| || ||||||||||| || || ||||  ||||||  ||| ||||| || |||||| ||||||||||   ||| |    
T  8772537 aaaattttatacatacttcccaccaaggatatcggacgaaaatcgtttaacctctgaggattatccaccttcggaataagaacgatgaaagtagcattaa 8772636  T
Q  230 tacctttaaccaacctaccattcctatg 257  Q
    |||||||| ||||| ||||||| |||||    
T  8772637 tacctttagccaacttaccatttctatg 8772664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 45994266 - 45994315
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcatt 176  Q
    |||||||| || ||||||||||||||||| ||||| ||||||||||||||    
T  45994266 gccaaaattttgtacaaactccccaccaaggaaataggacgaaagtcatt 45994315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 4936596 - 4936487
Alignment:
Q  109 ctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataa 208  Q
    |||||||| ||||  ||||||||||| || |||||||||||||| || ||||| || ||| | |||||||||  |||||| | | | || ||||| ||||    
T  4936596 ctgtttgctagaattttcgccaaaattttgtacaaactccccacgaaagaaatagggcgatactcattcaacgattgagggctagcaactttaggaataa 4936497  T
Q  209 gagcgatgaa 218  Q
    | ||||||||    
T  4936496 gggcgatgaa 4936487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 40680667 - 40680627
Alignment:
Q  196 accttagggataagagcgatgaaagtgctattgataccttt 236  Q
    |||||||| |||||||| ||||||||||||||||| |||||    
T  40680667 accttaggaataagagcaatgaaagtgctattgattccttt 40680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 104311 - 104202
Alignment:
Q  109 ctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataa 208  Q
    |||||||| ||||  ||||||||||| || ||||| ||||||||||| ||||| || ||||| |||||||||  |||||| | | | || ||||| ||||    
T  104311 ctgtttgctagaattttcgccaaaattttgtacaagctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataa 104212  T
Q  209 gagcgatgaa 218  Q
    | ||||||||    
T  104211 gggcgatgaa 104202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 4986515 - 4986466
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcatt 176  Q
    |||||||| || ||||||||||||||||| ||||| ||||||||||||||    
T  4986515 gccaaaattttgtacaaactccccaccaaggaaataggacgaaagtcatt 4986466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 7926058 - 7926167
Alignment:
Q  109 ctgtttgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataa 208  Q
    |||||||| ||||  ||||||||||| || ||||| ||||||||||| ||||| || ||||| |||||||||  |||||| | | | || ||||| ||||    
T  7926058 ctgtttgctagaattttcgccaaaattttgtacaagctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataa 7926157  T
Q  209 gagcgatgaa 218  Q
    | ||||||||    
T  7926158 gggcgatgaa 7926167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 43773151 - 43773030
Alignment:
Q  115 gcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcga 214  Q
    |||||||||||| ||||||| ||||||| ||  |||||||| ||||| |||||||| |||||||  || || |||  ||| |||||||| |||| ||| |    
T  43773151 gcaagaaccttcaccaaaattttatacatacctcccaccaaggaaatgggacgaaaatcattcagacgctgtggattatcaaccttaggaataaaagcaa 43773052  T
Q  215 tgaaagtgctattgataccttt 236  Q
    |||| || ||||| || |||||    
T  43773051 tgaaggtactatttatcccttt 43773030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 43246968 - 43246876
Alignment:
Q  144 actccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattgataccttt 236  Q
    |||||||||||| |||||||||||||| |||||||| || ||||||  ||| || || |  |||||| | ||||||||  |||||||||||||    
T  43246968 actccccaccaaggaaatcggacgaaaatcattcaaacgctgaggattatccactttcgaaataagaacaatgaaagttgtattgataccttt 43246876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 20825990 - 20826120
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctat 226  Q
    |||||||| ||||| | ||||||||||||||||||||| | ||| |||||||    |||||| || ||||| ||||| ||||| || ||||| ||   ||    
T  20825990 gccaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagggcaatgaacgtagcat 20826089  T
Q  227 tgatacctttaaccaacctaccattcctatg 257  Q
    | ||||||||   |||||| |||||||||||    
T  20826090 ttatacctttcgacaacctcccattcctatg 20826120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 16374553 - 16374444
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctat 226  Q
    |||||||||||||| | |||||| ||||| ||||| |||||||| ||||| | |   ||||| | | |||| ||||| || ||||| ||||||||  |||    
T  16374553 gccaaaatcttataaagactcccgaccaaagaaataggacgaaaatcattgagcttctgagggctagctactttaggaatgagagcaatgaaagtagtat 16374454  T
Q  227 tgataccttt 236  Q
    ||||||||||    
T  16374453 tgataccttt 16374444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 257
Target Start/End: Original strand, 19155349 - 19155491
Alignment:
Q  115 gcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcga 214  Q
    |||| ||||||||| | |||||| |||||||| ||||||||  | || ||| | || |||||||  |||||  | |  || |||||||| ||||||||||    
T  19155349 gcaaaaaccttcgcaagaatcttgtacaaacttcccaccaaacagattggatggaaatcattcagacgttgcaggctctcaaccttaggaataagagcga 19155448  T
Q  215 tgaaagtgctattgatacctttaaccaacctaccattcctatg 257  Q
    ||||||| ||||| || |||||   |||||| |||||||||||    
T  19155449 tgaaagtactatttattcctttggtcaacctcccattcctatg 19155491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 15675522 - 15675631
Alignment:
Q  127 gccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctat 226  Q
    |||||||||||||| | ||||||||||||  |||| |||||||| ||||| | |   ||||||| | |||| ||||| || ||||| ||||| ||  |||    
T  15675522 gccaaaatcttataaagactccccaccaaaaaaataggacgaaaatcattaagcttctgaggactagctactttaggaatgagagcaatgaatgtagtat 15675621  T
Q  227 tgataccttt 236  Q
    ||||||||||    
T  15675622 tgataccttt 15675631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 33549497 - 33549558
Alignment:
Q  22 gccaccaatataccatctagaatttgtcggcctctaataaaagcagactgagaatccgaaat 83  Q
    |||||||| |||||||| ||||| || || ||| |||| ||||||||||||||||| |||||    
T  33549497 gccaccaaaataccatcaagaatctggcgacctttaatgaaagcagactgagaatcagaaat 33549558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 17604793 - 17604693
Alignment:
Q  118 agaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatga 217  Q
    |||| ||| |||| ||| ||||| | ||||||||||||||||||||| |  || ||||||||   |||||| || ||||| ||||||||||| || ||||    
T  17604793 agaagctttgccagaattttataaagactccccaccaacgaaatcggtctgaaatcattcaaggattgagggcactctactttagggataagggcaatga 17604694  T
Q  218 a 218  Q
    |    
T  17604693 a 17604693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 4503 - 4418
Alignment:
Q  151 accaacgaaatcggacgaaagtcattcaaccgttgaggacaatctaccttagggataagagcgatgaaagtgctattgataccttt 236  Q
    ||||| ||||| || ||||| |||||||| | |||||||| ||| | ||| ||||||||||| || ||||| ||||| ||||||||    
T  4503 accaaagaaataggccgaaaatcattcaatctttgaggactatcaatcttcgggataagagctataaaagtactatttataccttt 4418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 60485 - 60550
Alignment:
Q  114 tgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaa 179  Q
    |||||||||||| |||||||  ||||| | ||| ||||||| |||||| || ||||||||||||||    
T  60485 tgcaagaacctttgccaaaactttataaatactacccaccagcgaaatggggcgaaagtcattcaa 60550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 138148 - 138083
Alignment:
Q  114 tgcaagaaccttcgccaaaatcttatacaaactccccaccaacgaaatcggacgaaagtcattcaa 179  Q
    |||||||||||| |||||||  ||||| | ||| ||||||| |||||| || ||||||||||||||    
T  138148 tgcaagaacctttgccaaaactttataaatactacccaccagcgaaatggggcgaaagtcattcaa 138083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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