View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5765_low_11 (Length: 232)

Name: NF5765_low_11
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5765_low_11
NF5765_low_11
[»] chr1 (14 HSPs)
chr1 (19-232)||(52750384-52750607)
chr1 (114-224)||(47112332-47112442)
chr1 (102-216)||(24508442-24508558)
chr1 (164-232)||(24509217-24509285)
chr1 (102-224)||(36142353-36142475)
chr1 (89-179)||(49652666-49652758)
chr1 (163-227)||(31697353-31697417)
chr1 (174-227)||(50124366-50124419)
chr1 (164-222)||(968155-968213)
chr1 (163-216)||(968212-968265)
chr1 (163-228)||(968921-968986)
chr1 (164-215)||(29021824-29021875)
chr1 (164-215)||(52751326-52751377)
chr1 (192-232)||(50123935-50123975)
[»] chr3 (8 HSPs)
chr3 (19-232)||(33389403-33389625)
chr3 (102-224)||(32304967-32305089)
chr3 (102-216)||(52254511-52254627)
chr3 (164-232)||(52255283-52255351)
chr3 (102-224)||(34817569-34817691)
chr3 (102-224)||(42540897-42541019)
chr3 (164-227)||(54834170-54834233)
chr3 (102-184)||(17514424-17514506)
[»] chr2 (9 HSPs)
chr2 (19-220)||(3093383-3093591)
chr2 (102-224)||(20685870-20685992)
chr2 (108-224)||(40468797-40468913)
chr2 (102-224)||(19298266-19298388)
chr2 (102-224)||(28189686-28189808)
chr2 (158-227)||(10708369-10708438)
chr2 (114-223)||(8029717-8029826)
chr2 (163-227)||(12602344-12602409)
chr2 (163-227)||(8892811-8892876)
[»] chr6 (6 HSPs)
chr6 (102-216)||(901656-901770)
chr6 (102-224)||(12261187-12261309)
chr6 (102-224)||(16146318-16146440)
chr6 (102-222)||(20746319-20746440)
chr6 (102-224)||(27129082-27129204)
chr6 (164-224)||(902511-902571)
[»] chr7 (11 HSPs)
chr7 (102-224)||(8684958-8685080)
chr7 (102-224)||(17278639-17278761)
chr7 (102-216)||(17236296-17236412)
chr7 (139-224)||(30765907-30765992)
chr7 (164-227)||(14682749-14682812)
chr7 (164-227)||(30474922-30474985)
chr7 (164-227)||(17238394-17238457)
chr7 (163-227)||(18298071-18298135)
chr7 (158-227)||(25443237-25443307)
chr7 (163-227)||(18297392-18297456)
chr7 (182-227)||(30474515-30474560)
[»] chr8 (2 HSPs)
chr8 (102-224)||(13462345-13462467)
chr8 (128-179)||(9319074-9319125)
[»] chr5 (7 HSPs)
chr5 (102-224)||(6794478-6794600)
chr5 (120-224)||(23082779-23082883)
chr5 (164-227)||(38385108-38385171)
chr5 (182-232)||(38385577-38385627)
chr5 (164-227)||(13824397-13824461)
chr5 (140-196)||(22165917-22165973)
chr5 (164-227)||(24041977-24042041)
[»] scaffold0202 (1 HSPs)
scaffold0202 (102-224)||(21904-22026)
[»] chr4 (12 HSPs)
chr4 (102-224)||(9087032-9087155)
chr4 (164-227)||(45044610-45044673)
chr4 (102-203)||(13631126-13631227)
chr4 (164-227)||(44183576-44183639)
chr4 (164-227)||(50282688-50282751)
chr4 (163-232)||(26280304-26280373)
chr4 (114-216)||(44182795-44182898)
chr4 (102-216)||(50281912-50282028)
chr4 (164-224)||(13630330-13630390)
chr4 (182-224)||(45045065-45045107)
chr4 (164-224)||(9091663-9091723)
chr4 (176-228)||(26281017-26281069)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 52750607 - 52750384
Alignment:
Q  19 gaagcaaaggtgagtagtgtgcaggtggtggtggagagtagttttggattttnnnnnnnnttgtggtgattagatataaagattttggtt---------t 109  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||        |||| |||||||||||||||||||||||||         |    
T  52750607 gaagcaaaggtgagtagtgcccaggtggtggtggagagtagttttggattttaaaaaaaattgtagtgattagatataaagattttggttgatttggttt 52750508  T
Q  110 aggaagattaagaaattatgttgttttgtttgaaagggatgtttttt-aatgggaaaattggttattgattgagttatgacattgattatgtttataaat 208  Q
    ||||||||| ||||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| ||    
T  52750507 aggaagattgagaaattgtgttgttttgattgaaagggatgtttttttaatggaaaaattggttattgattgagttatgaaattgattatgtttatagat 52750408  T
Q  209 atgatgaagatgatgatgattttt 232  Q
     |||||||||||||||||||||||    
T  52750407 ttgatgaagatgatgatgattttt 52750384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 47112442 - 47112332
Alignment:
Q  114 agattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtttataaatatgat 213  Q
    ||||| ||||||| |||||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| |||||||||||||||| || || |    
T  47112442 agattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgtt 47112343  T
Q  214 gaagatgatga 224  Q
    |||||||||||    
T  47112342 gaagatgatga 47112332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 24508558 - 24508442
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgat--tatg 199  Q
    |||||| |||| ||||| ||||||| |||||||| | ||||||||||||||||||||||  |||||||||||||| ||||||||||| || |||  ||||    
T  24508558 tttggtctagggagattgagaaattgtgttgtttagattgaaagggatgttttttaatgaaaaaattggttattggttgagttatgaaatagattatatg 24508459  T
Q  200 tttataaatatgatgaa 216  Q
    |||||| || |||||||    
T  24508458 tttatagatttgatgaa 24508442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 24509217 - 24509285
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatgattttt 232  Q
    ||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  24509217 aaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagatgatgatgattttt 24509285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 36142475 - 36142353
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | |||   ||||||| ||||||||| |||||||| ||||||||||||    
T  36142475 tttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatcaaaaaattgattattgattaagttatgaaattgattatgtt 36142376  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  36142375 tatatatttgttgaagatgatga 36142353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 49652758 - 49652666
Alignment:
Q  89 tagatataaagattttggttt--aggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgatt 179  Q
    |||||||||||||||||||||  ||||||||| ||||||| |||||||| | ||||||| ||||||| | ||||| |||||||||||||||||    
T  49652758 tagatataaagattttggtttttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataaatggaaaaattggttattgatt 49652666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 31697417 - 31697353
Alignment:
Q  163 aaaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    |||||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||||    
T  31697417 aaaattggttattgattgagatatgaaattgattatgtttatagatttgatgaagatgatgatga 31697353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 50124366 - 50124419
Alignment:
Q  174 ttgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  50124366 ttgattgagttatgaaattgattatgtttatagatttgatgaagatgatgatga 50124419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 968213 - 968155
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgat 222  Q
    |||||||||||||||| || ||||| ||||||||||||||||||| |||||| ||||||    
T  968213 aaattggttattgattaagatatgaaattgattatgtttataaatttgatgatgatgat 968155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 968265 - 968212
Alignment:
Q  163 aaaattggttattgattgagttatgacattgattatgtttataaatatgatgaa 216  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||| |||||||    
T  968265 aaaattggttattgattaagatatgaaattgattatgtttataaatttgatgaa 968212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 968921 - 968986
Alignment:
Q  163 aaaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatgat 228  Q
    ||||||||| |||||||||| ||||| |||| ||||||||||| || | ||||||| |||||||||    
T  968921 aaaattggtgattgattgagatatgaaattgtttatgtttatagatttcatgaagaagatgatgat 968986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 29021875 - 29021824
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatga 215  Q
    ||||||||| ||||||||||||||| ||||||| |||||||| || ||||||    
T  29021875 aaattggttgttgattgagttatgaaattgattttgtttatagatttgatga 29021824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 52751326 - 52751377
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatga 215  Q
    ||||||||| ||||||||||||||| ||||||| |||||||| || ||||||    
T  52751326 aaattggttgttgattgagttatgaaattgattttgtttatagatttgatga 52751377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 50123975 - 50123935
Alignment:
Q  192 tgattatgtttataaatatgatgaagatgatgatgattttt 232  Q
    |||||||||||||| || |||||||||||||||||| ||||    
T  50123975 tgattatgtttatagatttgatgaagatgatgatgaatttt 50123935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 33389625 - 33389403
Alignment:
Q  19 gaagcaaaggtgagtagtgtgcaggtggtggtggagagtagttttggattttnnnnnnnnttgtggtgattagatataaagattttggtt---------t 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||         ||||||||||||||||||||||||||||||         |    
T  33389625 gaagcaaaggtgagtagtgcgcaggtggtggtggagagtagtttttgattt-aaaaaaaattgtggtgattagatataaagattttggttgatttggttt 33389527  T
Q  110 aggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttat--tgattgagttatgacattgattatgtttataaa 207  Q
    ||| ||||| | ||||| |||||||||| ||||||||||||||||| ||||| |||||| |||||  |||||||||||||| |||||||||||||||| |    
T  33389526 agggagattgaaaaattgtgttgttttgattgaaagggatgttttt-aatggaaaaattagttatattgattgagttatgaaattgattatgtttataga 33389428  T
Q  208 tatgatgaagatgatgatgattttt 232  Q
    | |||||||||||||||||||||||    
T  33389427 tttgatgaagatgatgatgattttt 33389403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 32304967 - 32305089
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  32304967 tttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 32305066  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  32305067 tatatatttgttgaagatgatga 32305089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 52254627 - 52254511
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgat--tatg 199  Q
    |||||| |||| ||||| ||||||| | |||||| | ||||||||||||||||||||||| | |||||||||||||||||||||||| || |||  ||||    
T  52254627 tttggtctagggagattgagaaattgtattgtttagattgaaagggatgttttttaatggaacaattggttattgattgagttatgaaatggattatatg 52254528  T
Q  200 tttataaatatgatgaa 216  Q
    |||||| || |||||||    
T  52254527 tttatagatttgatgaa 52254511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 52255283 - 52255351
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatgattttt 232  Q
    ||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  52255283 aaattggttgttgattgagttatgaaattgattatgtttatagatatgatgaagatgatgatgaatttt 52255351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 34817691 - 34817569
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||| ||| ||||||  | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  34817691 tttgctttagggagattgagaaattgtgttgtttagattggaagagatgttcatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 34817592  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  34817591 tatagatttgttgaagatgatga 34817569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 42540897 - 42541019
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| | |||||| | |||||||  |||||| | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  42540897 tttgctttagggagattgagaaattgtattgtttagattgaaagaaatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 42540996  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  42540997 tatatatttgttgaagatgatga 42541019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 54834233 - 54834170
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||| ||||||||||||||| |||||||||||||||| || |||||||||| |||||||    
T  54834233 aaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagataatgatga 54834170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 17514424 - 17514506
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagtt 184  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | ||||| ||||||||||||||||| ||||    
T  17514424 tttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatggaaaaattggttattgattaagtt 17514506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 3093591 - 3093383
Alignment:
Q  19 gaagcaaaggtgagtagtgtgcaggtggtggtggagagtagttttggattttnnnnnnnnttgtggtgattagatataaagattttggtt---------t 109  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||         ||||||||||||||||||||||||||||||         |    
T  3093591 gaagcaaaggtgagtagtgcgcaggtgatggtggagagtagttttggattt-aaaaaaaattgtggtgattagatataaagattttggttgatttggttt 3093493  T
Q  110 aggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtttataaata 209  Q
    ||| ||||| | ||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||     
T  3093492 agggagattgataaattgtgttgttttgattgaaagggatattttttaatggaaaaattggttattgattgagttatgaaatt-attatgtttatagatt 3093394  T
Q  210 tgatgaagatg 220  Q
    |||||||||||    
T  3093393 tgatgaagatg 3093383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 20685992 - 20685870
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||  ||||||| | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  20685992 tttgctttagggagattgagaaattgtgttgtttagattgaaatagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 20685893  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  20685892 tatatatttgttgaagatgatga 20685870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 40468797 - 40468913
Alignment:
Q  108 ttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtttataaa 207  Q
    ||||| ||||| ||||||| |||||||| | ||||||  ||||||| | ||||  ||||||||||||||||| |||||||| |||||||||||||||| |    
T  40468797 ttagggagattgagaaattgtgttgtttagattgaaatagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtttatata 40468896  T
Q  208 tatgatgaagatgatga 224  Q
    | || ||||||||||||    
T  40468897 tttgttgaagatgatga 40468913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 19298266 - 19298388
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||||||||| ||||||| |||||| | | ||||||| ||||||| | ||||  ||||||||||||||||| | |||||| ||||||| ||||    
T  19298266 tttgttttaggaagattgagaaattgtgttgtgtagattgaaagagatgtttatgaatgaaaaaattggttattgattaaattatgaaattgattttgtt 19298365  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  19298366 tatatatttgttgaagatgatga 19298388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 28189808 - 28189686
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | ||||  ||||||| ||||||||| |||||||| ||||||||||||    
T  28189808 tttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattgattattgattaagttatgaaattgattatgtt 28189709  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || |  ||||||||||||    
T  28189708 tatatatttattgaagatgatga 28189686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 10708438 - 10708369
Alignment:
Q  158 atgggaaaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||    
T  10708438 atggaaaaattggttattgattgagttatgaaattgattatgtttatagatttgatgaagattatgatga 10708369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 8029717 - 8029826
Alignment:
Q  114 agattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtttataaatatgat 213  Q
    ||||| ||||||| |||||| | | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| |||||||||||||||| || || |    
T  8029717 agattgagaaattgtgttgtatagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgtt 8029816  T
Q  214 gaagatgatg 223  Q
    ||||| ||||    
T  8029817 gaagacgatg 8029826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 12602344 - 12602409
Alignment:
Q  163 aaaattggttattgattgagttatgacattgatt-atgtttataaatatgatgaagatgatgatga 227  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||| || |||||||||| |||||||    
T  12602344 aaaattggttattgattgagatatgaaattgattaatgtttatagatttgatgaagataatgatga 12602409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 8892811 - 8892876
Alignment:
Q  163 aaaattggttattgattgagttatgacattgatta-tgtttataaatatgatgaagatgatgatga 227  Q
    |||||| ||||||||| ||| || || |||||||| |||||||| || ||||||||||||||||||    
T  8892811 aaaatttgttattgatggagatacgaaattgattaatgtttatagatttgatgaagatgatgatga 8892876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 901770 - 901656
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    ||||||||||  ||||| | ||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  901770 tttggtttagagagattgataaattgtgttgtttagattgaaagggatgttttttaatggaaaaattggttattgattgagttatgaaatagattatgtt 901671  T
Q  202 tataaatatgatgaa 216  Q
    |||| || |||||||    
T  901670 tatagatttgatgaa 901656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 12261187 - 12261309
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  12261187 tttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 12261286  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  12261287 tatatatttgttgaagatgatga 12261309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 16146440 - 16146318
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| ||||||| ||||    
T  16146440 tttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattttgtt 16146341  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  16146340 tatatatttgttgaagatgatga 16146318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 20746319 - 20746440
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaa-ttggttattgattgagttatgacattgattatgt 200  Q
    |||| |||||||||||| ||||||| |||||||| | ||||||| ||||||| | ||||  |||| ||||||||||||| |||||||| |||||||||||    
T  20746319 tttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaaattggttattgattaagttatgaaattgattatgt 20746418  T
Q  201 ttataaatatgatgaagatgat 222  Q
    ||||| || || ||||||||||    
T  20746419 ttatatatttgttgaagatgat 20746440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 27129204 - 27129082
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| | ||||| || ||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  27129204 tttgctttagggagattgaaaaattgtgatgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 27129105  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  27129104 tatatatttgttgaagatgatga 27129082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 902511 - 902571
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatga 224  Q
    ||||||||| ||||||||||||||| |||||||||||||||| || |||| ||||| ||||    
T  902511 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagataatga 902571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 8685080 - 8684958
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    ||||||||||| ||||| ||||||| |||||||| | |||||| |||||||||| ||||| |||||||||| ||||||||||||| | ||||||||||||    
T  8685080 tttggtttagggagattgagaaattgtgttgtttagattgaaatggatgtttttgaatggaaaaattggttgttgattgagttataaaattgattatgtt 8684981  T
Q  202 tataaatatgatgaagatgatga 224  Q
    ||||  | |||||||||| ||||    
T  8684980 tataggtttgatgaagatcatga 8684958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 17278761 - 17278639
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  17278761 tttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 17278662  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  17278661 tatatatttgttgaagatgatga 17278639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 17236412 - 17236296
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgat--tatg 199  Q
    |||||| |||| ||||| ||||||| | |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||  ||||    
T  17236412 tttggtctagggagattgagaaattgtattgtttagattgaaagggatgttttttaatggaaaaattggttattgattgagttatgaaatggattatatg 17236313  T
Q  200 tttataaatatgatgaa 216  Q
    |||||| || |||||||    
T  17236312 tttatagatttgatgaa 17236296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 30765992 - 30765907
Alignment:
Q  139 ttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatga 224  Q
    ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| |||||||||||||||| || || ||||||||||||    
T  30765992 ttgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttgttgaagatgatga 30765907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 14682749 - 14682812
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||| ||||||||||||||| |||||||||||||||| || |||||||||| |||||||    
T  14682749 aaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagataatgatga 14682812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 30474922 - 30474985
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||| ||||||||||||||| |||||||||||||||| || |||| |||||||||||||    
T  30474922 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagatgatgatga 30474985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 17238394 - 17238457
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    |||||| || ||||||||||||||| |||||||||||||||| || || |||||||||||||||    
T  17238394 aaattgattgttgattgagttatgaaattgattatgtttatagatttgctgaagatgatgatga 17238457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 18298071 - 18298135
Alignment:
Q  163 aaaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| || ||||||||| || |||||    
T  18298071 aaaattggttattgattgagatatgaaattgtttatgtttatagatttgatgaagaagaagatga 18298135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 25443307 - 25443237
Alignment:
Q  158 atgggaaaattggttattgattgagttatgacattga-ttatgtttataaatatgatgaagatgatgatga 227  Q
    |||| |||||||||||| ||||||||||||| ||| | ||||||||||| || |||||||||| |||||||    
T  25443307 atggaaaaattggttatagattgagttatgaaattaatttatgtttatagatttgatgaagattatgatga 25443237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 18297456 - 18297392
Alignment:
Q  163 aaaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||||||||||| || ||||| | | ||||||||||||||| ||||||| ||| ||||||    
T  18297456 aaaattggttattgattaagatatgaaactcattatgtttataaatttgatgaacatggtgatga 18297392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 30474560 - 30474515
Alignment:
Q  182 gttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||| ||||| |||||||||| || ||||||||||||||||||    
T  30474560 gttatgaaattgagtatgtttatagatttgatgaagatgatgatga 30474515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 13462467 - 13462345
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  13462467 tttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 13462368  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  13462367 tatatatttgttgaagatgatga 13462345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 9319074 - 9319125
Alignment:
Q  128 tgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgatt 179  Q
    |||||||| | ||||||||||||||||| ||||  |||||||||||||||||    
T  9319074 tgttgtttagattgaaagggatgtttttgaatgaaaaaattggttattgatt 9319125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 6794478 - 6794600
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  6794478 tttgttttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 6794577  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  6794578 tatatatttgttgaagatgatga 6794600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 23082883 - 23082779
Alignment:
Q  120 agaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtttataaatatgatgaagat 219  Q
    ||||||| |||||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| |||||||||||||||| || |  |||||||    
T  23082883 agaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttattgaagat 23082784  T
Q  220 gatga 224  Q
    |||||    
T  23082783 gatga 23082779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 38385171 - 38385108
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  38385171 aaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagatgatgatga 38385108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 38385577 - 38385627
Alignment:
Q  182 gttatgacattgattatgtttataaatatgatgaagatgatgatgattttt 232  Q
    ||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  38385577 gttatgaaattgattatgtttatagatttgatgaagatgatgatgattttt 38385627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 13824397 - 13824461
Alignment:
Q  164 aaattggttattgattgagttatgacattgatta-tgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||||||||| ||| ||||| |||||||| |||||||| || ||||||||||||||||||    
T  13824397 aaattggttattgatggagatatgaaattgattaatgtttatagatttgatgaagatgatgatga 13824461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 22165917 - 22165973
Alignment:
Q  140 tgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgatt 196  Q
    |||||| |||||||||| |  ||||||||||||||||||||||||||| ||||||||    
T  22165917 tgaaagtgatgtttttttagtggaaaattggttattgattgagttatgccattgatt 22165973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 24042041 - 24041977
Alignment:
Q  164 aaattggttattgattgagttatgacattgatta-tgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||||||||| ||| ||||| |||||||| |||||||| || ||||||||||||||||||    
T  24042041 aaattggttattgatggagatatgaaattgattaatgtttatagatttgatgaagatgatgatga 24041977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 21904 - 22026
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    |||| |||||| ||||| |||||||  ||||||| | ||||||| ||||||| | ||||  ||||||||||||||||| |||||||| ||||||||||||    
T  21904 tttgctttagggagattgagaaattgagttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgattaagttatgaaattgattatgtt 22003  T
Q  202 tataaatatgatgaagatgatga 224  Q
    |||| || || ||||||||||||    
T  22004 tatagatttgttgaagatgatga 22026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 9087032 - 9087155
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaa-ttggttattgattgagttatgacattgattatgt 200  Q
    |||| |||||| ||||| ||||||| |||||||| | ||||||| ||||||| | ||||  |||| ||||||||||||| |||||||| |||||||||||    
T  9087032 tttgttttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaaattggttattgattaagttatgaaattgattatgt 9087131  T
Q  201 ttataaatatgatgaagatgatga 224  Q
    ||||| || || ||||||||||||    
T  9087132 ttatatatttgttgaagatgatga 9087155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 45044673 - 45044610
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  45044673 aaattggttattgattgagttatgaaattgattatgtttatatatttgatgaagatgatgatga 45044610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 13631126 - 13631227
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgattatgtt 201  Q
    ||||||||||  ||||| | ||||| |||||||| | |||||| |||||||||| ||||| ||||||||||||||||| |||||||| || |||||||||    
T  13631126 tttggtttagagagattgataaattgtgttgtttagattgaaatggatgtttttgaatggaaaaattggttattgattaagttatgaaatagattatgtt 13631225  T
Q  202 ta 203  Q
    ||    
T  13631226 ta 13631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 44183576 - 44183639
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  44183576 aaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagatgatgatga 44183639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 50282688 - 50282751
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatga 227  Q
    ||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||    
T  50282688 aaattggttgttgattgagttatgaaattgattatgtttatagatttgatgaagatgatgatga 50282751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 26280373 - 26280304
Alignment:
Q  163 aaaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatgatgattttt 232  Q
    ||||||||||||||||| || ||||| ||| ||||||||||||||| ||||||| |||||||||||||||    
T  26280373 aaaattggttattgattaagatatgaaattcattatgtttataaatttgatgaacatgatgatgattttt 26280304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 216
Target Start/End: Complemental strand, 44182898 - 44182795
Alignment:
Q  114 agattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgat--tatgtttataaatatg 211  Q
    ||||| ||||||| | |||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||  |||||||||| || ||    
T  44182898 agattgagaaattgtattgtttagattgaaagggatgttttttaat-ggaaaaatggttattgattgagttatgaaatggattatatgtttatagatttg 44182800  T
Q  212 atgaa 216  Q
    |||||    
T  44182799 atgaa 44182795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 50282028 - 50281912
Alignment:
Q  102 tttggtttaggaagattaagaaattatgttgttttgtttgaaagggatgttttttaatgggaaaattggttattgattgagttatgacattgat--tatg 199  Q
    |||||| |||| ||||| ||||||| | |||||| | |||||||||||||  |||||||| ||||||| |||||||||||||||||| || |||  ||||    
T  50282028 tttggtctagggagattgagaaattgtattgtttagattgaaagggatgtaatttaatggaaaaattgattattgattgagttatgaaatggattatatg 50281929  T
Q  200 tttataaatatgatgaa 216  Q
    |||||| || |||||||    
T  50281928 tttatagatttgatgaa 50281912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 13630390 - 13630330
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatga 224  Q
    ||||||||| ||||||||||||||| |||||||||||||||| || |||| ||||||||||    
T  13630390 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagatgatga 13630330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 45045065 - 45045107
Alignment:
Q  182 gttatgacattgattatgtttataaatatgatgaagatgatga 224  Q
    ||||||| |||||||||||||||| || |||||||||||||||    
T  45045065 gttatgaaattgattatgtttatagatttgatgaagatgatga 45045107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 9091723 - 9091663
Alignment:
Q  164 aaattggttattgattgagttatgacattgattatgtttataaatatgatgaagatgatga 224  Q
    |||||| || || |||||||||||| ||||| || ||||||| || |||||||||||||||    
T  9091723 aaattgcttgttaattgagttatgaaattgaatacgtttatagatttgatgaagatgatga 9091663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 26281017 - 26281069
Alignment:
Q  176 gattgagttatgacattgattatgtttataaatatgatgaagatgatgatgat 228  Q
    ||||||| ||||| |||| ||||||||||| || ||||||||| |||||||||    
T  26281017 gattgagatatgaaattgtttatgtttatagatttgatgaagaagatgatgat 26281069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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