View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5765_low_8 (Length: 244)
Name: NF5765_low_8
Description: NF5765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5765_low_8 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 53661385 - 53661200
Alignment:
| Q |
60 |
aacgaaacagacgtaactgatatcattaataaacaaatattcaatacaagtaggctaaatctnnnnnnnnn-tacggtgactaacccaagaacatgtcac |
158 |
Q |
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| T |
53661385 |
aacgaaacagacgtaactgatatcattaataaacaaatattcaatacaagtaggctaaatctaaaaaaaaaatatggtgactaacccaagaacatgccgc |
53661286 |
T |
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| Q |
159 |
ccgtgcaaagtatgagtagtcatgtttgtttgtcgtctaataatttttacctcgaagttgaaatgtaaacctaactcataaataat |
244 |
Q |
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| T |
53661285 |
ccgtgcaaagtatgagtagtcatgttcgtttatcgtctaataatttttacctcgaagttgaaatgtaaagctaactcataaataat |
53661200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 2065150 - 2065036
Alignment:
| Q |
131 |
tacggtgactaacccaagaacatgtcacccgtgc-aaagtatgagtagtcatgtttgtttgtcgtctaataatttttacctcgaagttgaaatgtaaacc |
229 |
Q |
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| T |
2065150 |
tacggtgactagcccaagaacatgctaccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcaccttgaagttgaaatgtaaaga |
2065051 |
T |
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| Q |
230 |
taactcataaataat |
244 |
Q |
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| T |
2065050 |
taactgataaataat |
2065036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 35750904 - 35750844
Alignment:
| Q |
183 |
tttgtttgtcgtctaataatttttacctcgaagttgaaatgtaaacctaactcataaataa |
243 |
Q |
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| T |
35750904 |
tttgtttgtcctcgaataaacttcacctcaaagttgaaatgtaaaactaactcagaaataa |
35750844 |
T |
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